<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-13274" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2026-01-28</depositionDate>
            <releaseDate>2026-07-12</releaseDate>
            <updateDate>2026-07-12</updateDate>
        </keyDates>
        <title>Single-particle Cryo Electron Microscopy of Human Cytomegalovirus Protease Bound to an Inhibitory Antibody Fragment</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0003-1981-1244</authorORCID>
            <firstName>Marcell</firstName>
            <lastName>Zimanyi</lastName>
            <organization type="academic">Department of Biochemistry and Biophysics, University of California San Francisco</organization>
            <townOrCity>San Francisco</townOrCity>
            <stateOrProvince>CA</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>94158</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0001-7704-9185</authorORCID>
            <firstName>Charles</firstName>
            <middleName>S</middleName>
            <lastName>Craik</lastName>
            <organization type="academic">Department of Pharmaceutical Chemistry, University of California San Francisco</organization>
            <townOrCity>San Francisco</townOrCity>
            <stateOrProvince>CA</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>94158</postOrZipCode>
        </principalInvestigator>
        <principalInvestigator private="true">
            <authorORCID>0000-0001-9535-0369</authorORCID>
            <firstName>Yifan</firstName>
            <lastName>Cheng</lastName>
            <organization type="academic">Department of Biochemistry and Biophysics, University of California San Francisco</organization>
            <townOrCity>San Francisco</townOrCity>
            <stateOrProvince>CA</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>94158</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0003-1981-1244">Zimanyi M</author>
            <author authorORCID="0000-0001-8323-562X">Hulce KR</author>
            <author authorORCID="0000-0002-0369-1922">Bohn M</author>
            <author authorORCID="0009-0008-7524-3310">Norman J</author>
            <author authorORCID="0000-0002-3194-689X">Rohweder PJ</author>
            <author authorORCID="0000-0001-9535-0369">Cheng Y</author>
            <author authorORCID="0000-0001-7704-9185">Craik CS</author>
            <author authorORCID="0000-0003-4390-108X">Detomasi TC</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)</fundingBody>
                <code>U54AI170792</code>
                <country>United States</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="TB">7.4</datasetSize>
        <entryDOI>10.6019/EMPIAR-13274</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-72658</emdbEntry>
            <emdbEntry>EMD-72659</emdbEntry>
            <emdbEntry>EMD-72660</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="false" preprint="true">
                    <author authorORCID="0000-0003-1981-1244" order="1">Zimanyi M</author>
                    <author authorORCID="0000-0001-8323-562X" order="2">Hulce KR</author>
                    <author authorORCID="0000-0002-0369-1922" order="3">Bohn M</author>
                    <author authorORCID="0009-0008-7524-3310" order="4">Norman J</author>
                    <author authorORCID="0000-0002-3194-689X" order="5">Rohweder PJ</author>
                    <author authorORCID="0000-0001-9535-0369" order="6">Cheng Y</author>
                    <author authorORCID="0000-0001-7704-9185" order="7">Craik CS</author>
                    <author authorORCID="0000-0003-4390-108X" order="8">Detomasi TC</author>
                    <title>Antibody Reveals Conformational Latch Controlling Herpesvirus Proteases</title>
                    <journal>bioRxiv</journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country></country>
                    <externalReferences type="doi">10.1101/2025.10.17.683123</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned multi-frame micrographs of human cytomegalovirus protease in complex with an inhibitory antibody fragment</name>
        <directory>/data/movies</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>EER</headerFormat>
        <dataFormat>EER</dataFormat>
        <numImagesOrTiltSeries>16378</numImagesOrTiltSeries>
        <framesPerImage>1096</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>variable</imageWidth>
            <pixelWidth>0.743</pixelWidth>
            <imageHeight>variable</imageHeight>
            <pixelHeight>0.743</pixelHeight>
        </dimensions>
        <details>There are movies from 2 different grids in this dataset that were collected in a single krios session. In MZJ_1, the grids are Quantifoil 1.2/1.3 400 mesh copper foil grids, and MZJ_3 are UltrAUfoil 1.2/1.3 300 mesh grids. The MZJ_3 dataset tends to yield better particles, and our final reconstructions were comprised of about 80 percent particles from MZJ_3.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Unclassified particles of human cytomegalovirus protease bound to an inhibitory antibody fragment</name>
        <directory>/data/All_particles_unsorted</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>1455383</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>variable</imageWidth>
            <pixelWidth>variable</pixelWidth>
            <imageHeight>variable</imageHeight>
            <pixelHeight>variable</pixelHeight>
        </dimensions>
        <details>All particles used in final reconstructions. Upon classification, at least 3 poses of the protease relative to the Fab can be resolved.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
