<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-13099" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2025-11-07</depositionDate>
            <releaseDate>2026-03-17</releaseDate>
            <updateDate>2026-03-17</updateDate>
        </keyDates>
        <title>Focused Ion Beam - Scanning Electron Microscopy volume of the aboral pole of a Nematostella Vectensis polyp</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0001-6310-8404</authorORCID>
            <firstName>Aissam</firstName>
            <lastName>Ikmi</lastName>
            <organization type="academic">Developmental Biology Unit, European Molecular Biology Laboratory</organization>
            <townOrCity>Heidelberg</townOrCity>
            <country>Germany</country>
            <postOrZipCode>69117</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0001-6310-8404</authorORCID>
            <firstName>Aissam</firstName>
            <lastName>Ikmi</lastName>
            <organization type="academic">Developmental Biology Unit, European Molecular Biology Laboratory</organization>
            <townOrCity>Heidelberg</townOrCity>
            <country>Germany</country>
            <postOrZipCode>69117</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author>Basu SH</author>
            <author authorORCID="0000-0001-9010-533X">Ronchi PR</author>
            <author authorORCID="0000-0001-6310-8404">Ikmi AI</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody></fundingBody>
                <code></code>
                <country></country>
            </grantReference>
        </grantSupport>
        <datasetSize units="GB">16.4</datasetSize>
        <entryDOI>10.6019/EMPIAR-13099</entryDOI>
        <experimentType>FIB-SEM</experimentType>
        <scale>tissue</scale>
    </admin>
    <crossReferences>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="true">
                    <author order="1">Basu S</author>
                    <author order="2">Steenbergen P</author>
                    <author order="3">Gabler F</author>
                    <author authorORCID="0000-0002-8080-7546" order="4">Paix A</author>
                    <author authorORCID="0000-0001-9010-533X" order="5">Ronchi P</author>
                    <author order="6">Bourenkov G</author>
                    <author order="7">Schneider T</author>
                    <author order="8">Hellgoth J</author>
                    <author authorORCID="0000-0003-1334-6388" order="9">Kreshuk A</author>
                    <author authorORCID="0000-0003-2569-3942" order="10">Özbek S</author>
                    <author authorORCID="0000-0001-6310-8404" order="11">Ikmi A</author>
                    <title>Mesoglea biogenesis reveals a cryptic aboral valve for pressure regulation in cnidarian morphogenesis</title>
                    <journal>bioRxiv</journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country></country>
                    <year>2025</year>
                    <externalReferences type="doi">10.1101/2025.05.26.656114</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>FIB-SEM image sequence of the aboral region of the Nematostella Vectensis polyp</name>
        <directory>/data</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>2347</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>2916</imageWidth>
            <pixelWidth>160.0</pixelWidth>
            <imageHeight>2568</imageHeight>
            <pixelHeight>160.0</pixelHeight>
        </dimensions>
        <details>The image stack was acquired with a Zeiss Crossbeam 550. The raw images were aligned with Fiji using the plugin "Linear Stack Alignment with SIFT".</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
