<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-12992" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2025-09-17</depositionDate>
            <releaseDate>2026-05-01</releaseDate>
            <updateDate>2026-05-01</updateDate>
        </keyDates>
        <title>Single-particle cryo-EM dataset of H. neapolitanus CsoSCA in reducing conditions (inactive)</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0003-3405-6021</authorORCID>
            <firstName>Guillaume</firstName>
            <lastName>Gaullier</lastName>
            <organization type="academic">Department of Chemistry - Ångström Laboratory</organization>
            <street>Regementsvagen 10</street>
            <townOrCity>Uppsala</townOrCity>
            <country>Sweden</country>
            <postOrZipCode>752 37</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0001-5740-926X</authorORCID>
            <firstName>Cecilia</firstName>
            <lastName>Blikstad</lastName>
            <organization type="academic">Department of Chemistry - Ångström Laboratory</organization>
            <street>Regementsvagen 10</street>
            <townOrCity>Uppsala</townOrCity>
            <country>Sweden</country>
            <postOrZipCode>752 37</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0003-3405-6021">Gaullier G</author>
            <author authorORCID="0009-0009-5778-4698">Vogiatzi N</author>
            <author authorORCID="0000-0001-5740-926X">Blikstad C</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>Swedish Research Council</fundingBody>
                <code>2019-03700_VR</code>
                <country>Sweden</country>
            </grantReference>
            <grantReference>
                <fundingBody>Swedish Research Council for Sustainable Development</fundingBody>
                <code>2019-01171_Formas</code>
                <country>Sweden</country>
            </grantReference>
            <grantReference>
                <fundingBody>Swedish Research Council</fundingBody>
                <code>2023-05296_VR</code>
                <country>Sweden</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="TB">1.3</datasetSize>
        <entryDOI>10.6019/EMPIAR-12992</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-54975</emdbEntry>
            <emdbEntry>EMD-54976</emdbEntry>
            <emdbEntry>EMD-54977</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="false" preprint="false">
                    <author authorORCID="0009-0009-5778-4698" order="1">Vogiatzi N</author>
                    <author authorORCID="0000-0003-3405-6021" order="2">Gaullier G</author>
                    <author authorORCID="0000-0001-5740-926X" order="3">Blikstad C</author>
                    <title>Single-particle cryo-EM dataset of H. neapolitanus CsoSCA in reducing conditions (inactive)</title>
                    <journal></journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country></country>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Raw movies</name>
        <directory>/data/Images-Disc1</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>9745</numImagesOrTiltSeries>
        <framesPerImage>40</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>0.648</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>0.648</pixelHeight>
        </dimensions>
        <details>The gain reference needs to be applied: gainref_counted.mrc (no flip nor rotation needed in CryoSPARC).

Particle coordinates are provided as .cs files from CryoSPARC, also converted to .star files using pyem (see README file for details).

J26_particles_exported: coordinates of hexamer particles
J48_particles_exported: coordinates of dimer sub-particles (after C3 symmetry expansion and 3D classification), minor class
J58_particles_exported: coordinates of dimer sub-particles (after C3 symmetry expansion and 3D classification), major class</details>
        <segmentationList/>
        <micrographsFilePattern>data/Images-Disc1/GridSquare_*/Data/*_fractions.tiff</micrographsFilePattern>
        <pickedParticlesFilePattern>data/*_particles_exported.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Gain reference file</name>
        <directory>/data</directory>
        <category>micrographs - single frame</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>1</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>variable</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>variable</pixelHeight>
        </dimensions>
        <details>Gain reference file.</details>
        <segmentationList/>
        <micrographsFilePattern>data/gainref_counted.mrc</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
