<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-12914" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2025-07-30</depositionDate>
            <releaseDate>2026-03-04</releaseDate>
            <updateDate>2026-04-07</updateDate>
        </keyDates>
        <title>CryoEM dataset of M. mazei topoisomerase VI(A:E342Q)-minicircle DNA complex</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0002-3602-5651</authorORCID>
            <firstName>Daniel</firstName>
            <lastName>Richman</lastName>
            <organization type="academic">Department of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine</organization>
            <street>725 N Wolfe St</street>
            <townOrCity>Baltimore</townOrCity>
            <stateOrProvince>MD</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>21205</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0003-0666-1240</authorORCID>
            <firstName>James</firstName>
            <lastName>Berger</lastName>
            <organization type="academic">Department of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine</organization>
            <street>725 N Wolfe St</street>
            <townOrCity>Baltimore</townOrCity>
            <stateOrProvince>MD</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>21205</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-3602-5651">Richman DE</author>
            <author authorORCID="0000-0003-0666-1240">Berger JM</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>National Institutes of Health/National Cancer Institute (NIH/NCI)</fundingBody>
                <code>5R35 CA263778</code>
                <country>United States</country>
            </grantReference>
            <grantReference>
                <fundingBody>National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)</fundingBody>
                <code>1F32 GM128269</code>
                <country>United States</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="TB">14.1</datasetSize>
        <entryDOI>10.6019/EMPIAR-12914</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-49972</emdbEntry>
            <emdbEntry>EMD-70206</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0002-3602-5651" order="1">Richman DE</author>
                    <author authorORCID="0000-0002-3729-4706" order="2">Wendorff TJ</author>
                    <author authorORCID="0000-0003-3898-3842" order="3">Rashid F</author>
                    <author authorORCID="0000-0002-6674-9802" order="4">Beck C</author>
                    <author order="5">Yan Q</author>
                    <author authorORCID="0009-0000-3444-1910" order="6">Johnson HR</author>
                    <author order="7">Eckerty RA</author>
                    <author authorORCID="0000-0003-1553-9669" order="8">Fogg JM</author>
                    <author authorORCID="0000-0001-9039-8523" order="9">Baker ML</author>
                    <author authorORCID="0000-0003-0533-1637" order="10">Zechiedrich L</author>
                    <author authorORCID="0000-0003-0666-1240" order="11">Berger JM</author>
                    <title>Supercoiled DNA recognition and cleavage control in topoisomerase VI</title>
                    <journal>Nature communications</journal>
                    <journalAbbreviation>Nat Commun</journalAbbreviation>
                    <country></country>
                    <issue>1</issue>
                    <volume>17</volume>
                    <year>2026</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1038/s41467-026-69491-0</externalReferences>
                    <externalReferences type="pubmed">41698922</externalReferences>
                    <details>These micrographs are unaligned eer files from one microscopy session and grid.</details>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned eer micrographs of M mazei Top6(A:E342Q)-306 bp minicircle DNA-ADPNP complex</name>
        <directory>/data</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>EER</headerFormat>
        <dataFormat>EER</dataFormat>
        <numImagesOrTiltSeries>26728</numImagesOrTiltSeries>
        <framesPerImage>1233</framesPerImage>
        <voxelType>BIT</voxelType>
        <dimensions>
            <imageWidth>4096</imageWidth>
            <pixelWidth>0.93</pixelWidth>
            <imageHeight>4096</imageHeight>
            <pixelHeight>0.93</pixelHeight>
        </dimensions>
        <details>This dataset was collected with no stage tilt. Data were collected at the Beckman Center for CryoEM at Johns Hopkins University School of Medicine on a Krios G3i, camera: TFS Falcon 4i, image shift at 130kx mag, exposure settings: ~4.0 s [images saved in eer format], e flux: ~8 e-/px/s with ~40 e-/Å^2 total dose, pixel size: ~0.93 Å/px (e- counting with an image dimension of 4096x4096 px), energy filter: Selectris 10 eV, defocus range: -0.8 µm to -1.8 µm (nominal).</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
