<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-12779" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2025-05-14</depositionDate>
            <releaseDate>2025-09-04</releaseDate>
            <updateDate>2025-09-04</updateDate>
        </keyDates>
        <title>Cryo-ET of D. melanogaster Nup358::VN/Nup358::VC cells</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0002-4461-750X</authorORCID>
            <firstName>Jenny</firstName>
            <lastName>Sachweh</lastName>
            <organization type="academic">Department of Molecular Sociology, Max-Planck-Institute of Biophysics</organization>
            <street>Max-von-Laue-Straße 3</street>
            <townOrCity>Frankfurt</townOrCity>
            <stateOrProvince>Hesse</stateOrProvince>
            <country>Germany</country>
            <postOrZipCode>60438</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0002-7397-1321</authorORCID>
            <firstName>Martin</firstName>
            <lastName>Beck</lastName>
            <organization type="academic">Department of Molecular Sociology, Max-Planck-Institute of Biophysics</organization>
            <street>Max-von-Laue-Straße 3</street>
            <townOrCity>Frankfurt</townOrCity>
            <stateOrProvince>Hesse</stateOrProvince>
            <country>Germany</country>
            <postOrZipCode>60438</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-4461-750X">Sachweh J</author>
            <author authorORCID="0000-0002-7397-1321">Beck M</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>Hessian Ministry of Science, Higher Education and Art (HMWK)</fundingBody>
                <code>EnABLE</code>
                <country>Germany</country>
            </grantReference>
            <grantReference>
                <fundingBody>European Research Council (ERC)</fundingBody>
                <code>724379-Complex Assembly</code>
                <country>Germany</country>
            </grantReference>
            <grantReference>
                <fundingBody>European Research Council (ERC)</fundingBody>
                <code>101054823-NPCvalve</code>
                <country>Germany</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="GB">307.9</datasetSize>
        <entryDOI>10.6019/EMPIAR-12779</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>cell</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-53739</emdbEntry>
            <emdbEntry>EMD-53740</emdbEntry>
            <emdbEntry>EMD-53741</emdbEntry>
            <emdbEntry>EMD-53742</emdbEntry>
            <emdbEntry>EMD-53743</emdbEntry>
            <emdbEntry>EMD-53744</emdbEntry>
            <emdbEntry>EMD-53745</emdbEntry>
            <emdbEntry>EMD-53746</emdbEntry>
            <emdbEntry>EMD-53747</emdbEntry>
            <emdbEntry>EMD-53750</emdbEntry>
            <emdbEntry>EMD-53751</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="false" preprint="true">
                    <author authorORCID="0000-0002-4461-750X" order="1">Sachweh J</author>
                    <author authorORCID="0000-0002-4354-891X" order="2">Börmel M</author>
                    <author authorORCID="0000-0002-8350-6503" order="3">Klumpe S</author>
                    <author order="4">Becker A</author>
                    <author authorORCID="0000-0003-3862-8349" order="5">Taniguchi R</author>
                    <author authorORCID="0000-0003-3835-8238" order="6">Kubańska MA</author>
                    <author order="7">Pintschovius V</author>
                    <author order="8">Kaindl E</author>
                    <author authorORCID="0000-0002-6402-8315" order="9">Plitzko JM</author>
                    <author authorORCID="0000-0002-6559-7261" order="10">Wilfling F</author>
                    <author authorORCID="0000-0002-7397-1321" order="11">Beck M</author>
                    <author authorORCID="0000-0001-7491-0080" order="12">Hampoelz B</author>
                    <title>The small GTPase Ran defines Nuclear Pore Complex Asymmetry</title>
                    <journal></journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country></country>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Tilt series of D. melanogaster Nup358::VN/Nup358::VC cells</name>
        <directory>/data/EMPIAR_Fly/raw_data</directory>
        <category>tilt series</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>111</numImagesOrTiltSeries>
        <framesPerImage>61</framesPerImage>
        <frameRange>
            <frameRangeMin>42</frameRangeMin>
            <frameRangeMax>61</frameRangeMax>
        </frameRange>
        <voxelType>SIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>4096</imageWidth>
            <pixelWidth>2.414</pixelWidth>
            <imageHeight>4096</imageHeight>
            <pixelHeight>2.414</pixelHeight>
        </dimensions>
        <details>Tilt series were frame-aligned in SerialEM during acquisition, mrc and mdoc files for the stacks are provided. The subfolder "alignment_files", contains alignment files (.xf) and tilt files (.tlt) that were generated by IMOD, CTF estimation from gctf are included as gctf.star files. The cleaned tilt fils lists images excluded from raw stacks.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Filtered tomograms of D. melanogaster Nup358::VN/Nup358::VC cells</name>
        <directory>/data/EMPIAR_Fly/tomograms</directory>
        <category>reconstructed volumes</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>111</numImagesOrTiltSeries>
        <framesPerImage>500</framesPerImage>
        <voxelType>SIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>1024</imageWidth>
            <pixelWidth>9.656</pixelWidth>
            <imageHeight>1024</imageHeight>
            <pixelHeight>9.656</pixelHeight>
        </dimensions>
        <details>Non-CTF corrected tomograms reconstructed at bin 4 and processed by SIRT-like filtering in IMOD are provided.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
