<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-12552" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2023-11-07</depositionDate>
            <releaseDate>2026-07-07</releaseDate>
            <updateDate>2026-07-07</updateDate>
        </keyDates>
        <title>Integrin alpha-5 beta-1 in complex with BIIG2 Fab</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0003-1909-5751</authorORCID>
            <firstName>Melody</firstName>
            <middleName>Grace</middleName>
            <lastName>Campbell</lastName>
            <organization type="academic">Fred Hutchinson Cancer Center</organization>
            <street>1100 Fairview Ave. N.</street>
            <townOrCity>Seattle</townOrCity>
            <stateOrProvince>WA</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>98109</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0003-1909-5751</authorORCID>
            <firstName>Melody</firstName>
            <middleName>Grace</middleName>
            <lastName>Campbell</lastName>
            <organization type="academic">Fred Hutchinson Cancer Center</organization>
            <street>1100 Fairview Ave N.</street>
            <townOrCity>Seattle</townOrCity>
            <stateOrProvince>WA</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>98109</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-2030-2861">Nguyen AN</author>
            <author authorORCID="0000-0003-1909-5751">Campbell MGC</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)</fundingBody>
                <code>R35 GM147414-01</code>
                <country>United States</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="TB">3.7</datasetSize>
        <entryDOI>10.6019/EMPIAR-12552</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-44386</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="false" preprint="true">
                    <author authorORCID="0000-0002-2030-2861" order="1">Nguyen AN</author>
                    <author authorORCID="0000-0001-9702-9480" order="2">Heim JBH</author>
                    <author authorORCID="0000-0001-8029-8043" order="3">Cordara GC</author>
                    <author authorORCID="0000-0002-9826-1983" order="4">Chan MCC</author>
                    <author authorORCID="0000-0001-6886-0486" order="5">Johannesen HJ</author>
                    <author order="6">Charlesworth CC</author>
                    <author order="7">Li ML</author>
                    <author authorORCID="0000-0002-3484-9921" order="8">Azumaya CMA</author>
                    <author authorORCID="0000-0002-0977-2088" order="9">Madden BM</author>
                    <author authorORCID="0000-0001-6688-8151" order="10">Krengel UK</author>
                    <author authorORCID="0000-0003-1909-5751" order="11">Campbell MGC</author>
                    <author authorORCID="0000-0001-7462-8288" order="12">Meves AM</author>
                    <title>Structural and functional characterization of integrin α5-targeting antibodies for anti-angiogenic therapy</title>
                    <journal>bioRxiv</journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country>United States</country>
                    <externalReferences type="doi">10.1101/2025.01.08.631572</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned Frames of integrin a5b1 in complex with BIIG2 antibody fab fragment</name>
        <directory>/data/movies</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>3565</numImagesOrTiltSeries>
        <framesPerImage>99</framesPerImage>
        <frameRange>
            <frameRangeMin>1</frameRangeMin>
            <frameRangeMax>99</frameRangeMax>
        </frameRange>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>11520</imageWidth>
            <pixelWidth>0.561</pixelWidth>
            <imageHeight>8184</imageHeight>
            <pixelHeight>0.561</pixelHeight>
        </dimensions>
        <details>Tiff files containing the raw 99 movie frame (accumulating approximately 50 electron squared angstrom in a 6 second exposure.</details>
        <segmentationList/>
        <micrographsFilePattern>data/movies/22mar09a_*en.frames.tif</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/particle_stack</pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Motion corrected frames of integrin a5b1 in complex with BIIG2 antibody fab fragment</name>
        <directory>/data/motion_corrected_micrographs</directory>
        <category>micrographs - single frame</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>3565</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>1.122</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>1.122</pixelHeight>
        </dimensions>
        <details>Motion Corrected micrographs using MotionCorr2.</details>
        <segmentationList/>
        <micrographsFilePattern>data/motion_corrected_micrographs/*.mrc</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Movie Gain Refs</name>
        <directory>/data/Movie_gain_ref</directory>
        <category>micrographs - single frame</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>1</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>11520</imageWidth>
            <pixelWidth>0.556</pixelWidth>
            <imageHeight>8184</imageHeight>
            <pixelHeight>0.556</pixelHeight>
        </dimensions>
        <details>Gain reference for movie collection in DM4 and MRC format</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Polished particle of integrin a5b1 in complex with BIIG2 antibody fab fragment</name>
        <directory>/data/particle_stack</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRCS</headerFormat>
        <dataFormat>MRCS</dataFormat>
        <numImagesOrTiltSeries>374814</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>352</imageWidth>
            <pixelWidth>1.122</pixelWidth>
            <imageHeight>352</imageHeight>
            <pixelHeight>1.122</pixelHeight>
        </dimensions>
        <details>Polished particles from RELION using particle polishing</details>
        <segmentationList/>
        <micrographsFilePattern>data/motion_corrected_micrographs/*.mrc</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
