<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-12330" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2024-10-04</depositionDate>
            <releaseDate>2025-04-24</releaseDate>
            <updateDate>2025-04-24</updateDate>
        </keyDates>
        <title>Yeast P complex spliceosome</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0003-4738-9503</authorORCID>
            <firstName>Max</firstName>
            <lastName>Wilkinson</lastName>
            <organization type="academic">Massachusetts Institute of Technology</organization>
            <street>75 Ames Street</street>
            <townOrCity>Cambridge</townOrCity>
            <stateOrProvince>Massachusetts</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>02142</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0003-4738-9503</authorORCID>
            <firstName>Max</firstName>
            <lastName>Wilkinson</lastName>
            <organization type="academic">Massachusetts Institute of Technology</organization>
            <street>75 Ames Street</street>
            <townOrCity>Cambridge</townOrCity>
            <stateOrProvince>Massachusetts</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>02142</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0003-4738-9503">Wilkinson ME</author>
            <author authorORCID="0000-0002-9777-519X">Hoskins AA</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>Howard Hughes Medical Institute (HHMI)</fundingBody>
                <code>Helen Hay Whitney Postdoctoral Fellowship</code>
                <country>United States</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="TB">7.0</datasetSize>
        <entryDOI>10.6019/EMPIAR-12330</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-47157</emdbEntry>
            <emdbEntry>EMD-47158</emdbEntry>
            <emdbEntry>EMD-47159</emdbEntry>
            <emdbEntry>EMD-47160</emdbEntry>
            <emdbEntry>EMD-47161</emdbEntry>
            <emdbEntry>EMD-47162</emdbEntry>
            <emdbEntry>EMD-47163</emdbEntry>
            <emdbEntry>EMD-47164</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="true">
                    <author authorORCID="0000-0003-2172-7113" order="1">Senn KA</author>
                    <author authorORCID="0000-0002-4271-1586" order="2">Lipinski KA</author>
                    <author order="3">Zeps NJ</author>
                    <author authorORCID="0009-0004-0976-3749" order="4">Griffin AF</author>
                    <author authorORCID="0000-0003-4738-9503" order="5">Wilkinson ME</author>
                    <author authorORCID="0000-0002-9777-519X" order="6">Hoskins AA</author>
                    <title>Control of 3’ splice site selection by the yeast splicing factor Fyv6</title>
                    <journal>bioRxiv</journal>
                    <journalAbbreviation>Mol Cell</journalAbbreviation>
                    <country>United States</country>
                    <issue>7</issue>
                    <year>2024</year>
                    <externalReferences type="doi">10.1101/2024.05.04.592262</externalReferences>
                    <externalReferences type="pubmed">38746449</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned multi-frame movies of the yeast P-complex spliceosome, 81000x magnification</name>
        <directory>/data/movies_grid1</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>15690</numImagesOrTiltSeries>
        <framesPerImage>40</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>0.934</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>0.934</pixelHeight>
        </dimensions>
        <details>Data for grid 1, collected at the MRC LMB Krios1

Voltage		300 keV
Camera		Gatan K3, super-resolution mode with 2-fold binning by EPU
Energy filter	GIF, 20eV slit width
Magnification	81000
Pixel size	0.934 A/pix
Dose		40 e/A2
Exposure rate	25 e/pix/s
Exposure time	1.44s
Fractions	40	by mistake, some of the movies have 41 frames instead. Depending on your processing strategy, these might have to be removed or processed seperately to avoid bugs.

The gain reference "gainref.tiff" is provided. It can be used without rotation or flipping for RELION motion correction.

Metadata are also included for all maps deposited to the EMDB from this dataset. These are direct copies of the "run_data.star" from the Refine3D directory of the RELION project.</details>
        <segmentationList/>
        <micrographsFilePattern>data/movies_grid1/movies/GridSquare_*/Data/FoilHole_*_fractions.tiff</micrographsFilePattern>
        <pickedParticlesFilePattern>data/stateI_emd47157.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Unaligned multi-frame movies of the yeast P-complex spliceosome, 130000x magnification</name>
        <directory>/data/movies_grid2</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>35423</numImagesOrTiltSeries>
        <framesPerImage>40</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>0.664</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>0.664</pixelHeight>
        </dimensions>
        <details>Data for grid 2, collected at the MRC LMB Krios3

Voltage		300 keV
Camera		Gatan K3, super-resolution mode with 2-fold binning by EPU
Energy filter	GIF, 20eV slit width
Magnification	130000
Pixel size	0.664 A/pix
Dose		40 e/A2
Exposure rate	25 e/pix/s
Exposure time	0.72s
Fractions	40

The gain reference "gainref.tiff" is provided. It can be used without rotation or flipping for RELION motion correction.

Metadata are also included for all maps deposited to the EMDB from this dataset. These are direct copies of the "run_data.star" from the Refine3D directory of the RELION project.</details>
        <segmentationList/>
        <micrographsFilePattern>data/movies_grid2/movies/GridSquare_*/Data/FoilHole_*_fractions.tiff</micrographsFilePattern>
        <pickedParticlesFilePattern>data/stateI_emd47157.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
