<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-12328" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2024-10-03</depositionDate>
            <releaseDate>2025-11-18</releaseDate>
            <updateDate>2025-11-18</updateDate>
        </keyDates>
        <title>RNAP-TopoI complex on short-overhang scaffold</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0001-9635-3844</authorORCID>
            <firstName>Albert</firstName>
            <lastName>Weixlbaumer</lastName>
            <organization type="academic">Department of Integrated Structural Biology, Institute of Genetics and Molecular and Cellular Biology - IGBMC - UMR 7104 - U 1258</organization>
            <street>1, rue Laurent Fries</street>
            <townOrCity>Illkirch</townOrCity>
            <country>France</country>
            <postOrZipCode>67404</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0001-7793-4029</authorORCID>
            <firstName>Valerie</firstName>
            <lastName>Lamour</lastName>
            <organization type="academic">Department of integrative Structural Biology, IGBMC</organization>
            <townOrCity>Illkirch</townOrCity>
            <country>France</country>
            <postOrZipCode>67404</postOrZipCode>
        </principalInvestigator>
        <principalInvestigator private="true">
            <authorORCID>0000-0001-9635-3844</authorORCID>
            <firstName>Albert</firstName>
            <lastName>Weixlbaumer</lastName>
            <organization type="academic">Department of Integrated Structural Biology, Institute of Genetics and Molecular and Cellular Biology - IGBMC - UMR 7104 - U 1258</organization>
            <street>1, rue Laurent Fries</street>
            <townOrCity>Illkirch</townOrCity>
            <country>France</country>
            <postOrZipCode>67404</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-2809-5596">Vidmar VV</author>
            <author authorORCID="0000-0001-7793-4029">Lamour VL</author>
            <author authorORCID="0000-0001-9635-3844">Weixlbaumer AW</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>Agence Nationale de la Recherche (ANR)</fundingBody>
                <code>ANR-21-CE11-0040-01</code>
                <country>France</country>
            </grantReference>
            <grantReference>
                <fundingBody>Agence Nationale de la Recherche (ANR)</fundingBody>
                <code>ANR-10-INBS-05</code>
                <country>France</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="TB">1.5</datasetSize>
        <entryDOI>10.6019/EMPIAR-12328</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-51270</emdbEntry>
            <emdbEntry>EMD-51271</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="false" preprint="true">
                    <author authorORCID="0000-0002-2809-5596" order="1">Vidmar VV</author>
                    <author authorORCID="0009-0002-1528-7342" order="2">Borde CB</author>
                    <author order="3">Bruno LB</author>
                    <author authorORCID="0000-0001-8616-8418" order="4">Takacs MT</author>
                    <author authorORCID="0000-0003-3064-6569" order="5">Batisse CB</author>
                    <author order="6">Saint-Andre CSA</author>
                    <author authorORCID="0000-0002-9573-6170" order="7">Zhu CZ</author>
                    <author authorORCID="0000-0003-2804-2192" order="8">Espeli OE</author>
                    <author authorORCID="0000-0001-7793-4029" order="9">Lamour VL</author>
                    <author authorORCID="0000-0001-9635-3844" order="10">Weixlbaumer AW</author>
                    <title>DNA topoisomerase I acts as supercoiling sensor for transcription elongation in E. coli</title>
                    <journal></journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country></country>
                    <details>The micrographs are raw movies (39 frames) without gain correction (gain.mrc is provided); total electron dose is 55.55 e/A2.</details>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>unaligned multi-frame movies of RNAP-TopoI on short-overhang scaffold</name>
        <directory>/data/movies</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>7254</numImagesOrTiltSeries>
        <framesPerImage>39</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>0.862</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>0.862</pixelHeight>
        </dimensions>
        <details>300 kV, Cs 0.01 mm, defocus range -1.0 – -2.0 um, total dose 55.55 e/A2
Gain reference file is provided in data/movies/gain.mrc</details>
        <segmentationList/>
        <micrographsFilePattern>data/movies/movies-*/EC13-6*</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/particles/</pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>picked particles of RNAP-TopoI on short-overhang scaffold</name>
        <directory>/data/particles</directory>
        <category>picked particles - single frame - unprocessed</category>
        <headerFormat>MRCS</headerFormat>
        <dataFormat>MRCS</dataFormat>
        <numImagesOrTiltSeries>7250</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>360</imageWidth>
            <pixelWidth>0.862</pixelWidth>
            <imageHeight>360</imageHeight>
            <pixelHeight>0.862</pixelHeight>
        </dimensions>
        <details>Particles were picked and extracted in WARP (Tegunov &amp; Cramer, Nat. Methods 2019) as a part of on-the-fly processing pipeline at the IGBMC, Strasbourg, France.</details>
        <segmentationList/>
        <micrographsFilePattern>data/movies/movies-*/EC13-6*</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/particles/</pickedParticlesDirectory>
    </imageSet>
</entry>
