<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-12228" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2024-07-26</depositionDate>
            <releaseDate>2025-02-03</releaseDate>
            <updateDate>2025-02-03</updateDate>
        </keyDates>
        <title>Cryo-EM images of B. megaterium gas vesicles in thin vitreous monolayers</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0003-3721-5104</authorORCID>
            <firstName>Stefan</firstName>
            <middleName>T</middleName>
            <lastName>Huber</lastName>
            <organization type="academic">Department of Bionanoscience / TU Delft</organization>
            <street>Van der Maasweg 9</street>
            <townOrCity>Delft</townOrCity>
            <stateOrProvince>Zuid-Holland</stateOrProvince>
            <country>Netherlands</country>
            <postOrZipCode>2629HZ</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0003-3721-5104</authorORCID>
            <firstName>Arjen</firstName>
            <middleName>J</middleName>
            <lastName>Jakobi</lastName>
            <organization type="academic">Department of Bionanoscience / TU Delft</organization>
            <street>Van der Maasweg 9</street>
            <townOrCity>Delft</townOrCity>
            <stateOrProvince>Zuid-Holland</stateOrProvince>
            <country>Netherlands</country>
            <postOrZipCode>2629HZ</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0003-3721-5104">Huber ST</author>
            <author authorORCID="0000-0002-7761-2027">Jakobi AJ</author>
        </authorsList>
        <grantSupport>
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                <fundingBody></fundingBody>
                <code></code>
                <country></country>
            </grantReference>
        </grantSupport>
        <datasetSize units="TB">2.3</datasetSize>
        <entryDOI>10.6019/EMPIAR-12228</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-14238</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0003-3721-5104" order="1">Huber ST</author>
                    <author order="2">Terwiel D</author>
                    <author order="3">Evers WH</author>
                    <author order="4">Maresca D</author>
                    <author authorORCID="0000-0002-7761-2027" order="5">Jakobi AJ</author>
                    <title>Cryo-EM structure of gas vesicles for buoyancy-controlled motility</title>
                    <journal>Cell</journal>
                    <journalAbbreviation>Cell</journalAbbreviation>
                    <country></country>
                    <issue>5</issue>
                    <volume>186</volume>
                    <firstPage>975</firstPage>
                    <lastPage>986.e13</lastPage>
                    <year>2023</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1016/j.cell.2023.01.041</externalReferences>
                    <externalReferences type="pubmed">36868215</externalReferences>
                    <details>4351 super-resolution movies, 1.37A pixel size (later calibrated to ~1.34 using a newer dataset and comparison of helical parameters), 30 e/A2, 60 frames, defocus range from −0.25 to −1.25 μm. Star-file of manual picks of thin 34-42 nm tubes in RELION included.</details>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned multi-frame movies of B.megaterium gas vesicles</name>
        <directory>/data/movies</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>4352</numImagesOrTiltSeries>
        <framesPerImage>60</framesPerImage>
        <voxelType>SIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>11520</imageWidth>
            <pixelWidth>0.685</pixelWidth>
            <imageHeight>8184</imageHeight>
            <pixelHeight>0.685</pixelHeight>
        </dimensions>
        <details>Unaligned multi-frame movies of B.megaterium gas vesicles (concentation: OD500=3.1) in superresolution mode from a K3 detector. Pixelsize is 1.37A, superres pixelsize is 0.685A. This pixel size was used for processing and in the publication. Subsequent work established that the pixelsize was not perfectly calibrated and should be closer to 1.341A.</details>
        <segmentationList/>
        <micrographsFilePattern>data/movies/FoilHole_*_fractions*tiff</micrographsFilePattern>
        <pickedParticlesFilePattern>data/manualpick_starfiles/*star</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/manualpick_starfiles</pickedParticlesDirectory>
    </imageSet>
</entry>
