<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-12148" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2024-05-06</depositionDate>
            <releaseDate>2024-07-09</releaseDate>
            <updateDate>2024-07-09</updateDate>
        </keyDates>
        <title>Native capsid of Rhodobacter microvirus Ebor computed with I4 symmetry</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0002-1223-2584</authorORCID>
            <firstName>Pavol</firstName>
            <lastName>Bardy</lastName>
            <organization type="academic">University of York</organization>
            <street>Heslington</street>
            <townOrCity>York</townOrCity>
            <stateOrProvince>North Yorkshire</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>YO10 5DD</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0002-1223-2584</authorORCID>
            <firstName>Pavol</firstName>
            <lastName>Bardy</lastName>
            <organization type="academic">University of York</organization>
            <street>Heslington</street>
            <townOrCity>York</townOrCity>
            <stateOrProvince>North Yorkshire</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>YO10 5DD</postOrZipCode>
        </principalInvestigator>
        <principalInvestigator private="true">
            <authorORCID>0000-0002-4533-3816</authorORCID>
            <firstName>Alfred</firstName>
            <middleName>A</middleName>
            <lastName>Antson</lastName>
            <organization type="academic">University of York</organization>
            <street>Heslington</street>
            <townOrCity>York</townOrCity>
            <country>United Kingdom</country>
            <postOrZipCode>YO10 5DD</postOrZipCode>
        </principalInvestigator>
        <principalInvestigator private="true">
            <authorORCID>0000-0001-5324-4293</authorORCID>
            <firstName>Paul</firstName>
            <middleName>CM</middleName>
            <lastName>Fogg</lastName>
            <organization type="academic">University of York</organization>
            <street>Heslington</street>
            <townOrCity>York</townOrCity>
            <stateOrProvince>North Yorkshire</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>YO10 5DD</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author>Bardy P</author>
            <author>MacDonald CIW</author>
            <author>Kirchberger PC</author>
            <author>Jenkins HT</author>
            <author>Botka T</author>
            <author>Byrom L</author>
            <author>Alim NTB</author>
            <author>Traore DAK</author>
            <author>Konig HC</author>
            <author>Nicholas TR</author>
            <author>Chechik M</author>
            <author>Hart SJ</author>
            <author>Turkenburg JP</author>
            <author>Blaza JN</author>
            <author>Beatty JT</author>
            <author>Fogg PCM</author>
            <author>Antson AA</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>Wellcome Trust</fundingBody>
                <code>224067/Z/21/Z</code>
                <country>United Kingdom</country>
            </grantReference>
            <grantReference>
                <fundingBody>Wellcome Trust</fundingBody>
                <code>206377</code>
                <country>United Kingdom</country>
            </grantReference>
            <grantReference>
                <fundingBody>Wellcome Trust</fundingBody>
                <code>109363/Z/15/A</code>
                <country>United Kingdom</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="TB">1.5</datasetSize>
        <entryDOI>10.6019/EMPIAR-12148</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>virus</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-50357</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="true">
                    <author order="1">Bardy P</author>
                    <author order="2">MacDonald CI</author>
                    <author authorORCID="0000-0002-8387-6440" order="3">Kirchberger PC</author>
                    <author authorORCID="0000-0002-3302-6966" order="4">Jenkins HT</author>
                    <author order="5">Botka T</author>
                    <author order="6">Byrom L</author>
                    <author order="7">Alim NT</author>
                    <author authorORCID="0000-0003-1001-4716" order="8">Traore DA</author>
                    <author order="9">König HC</author>
                    <author order="10">Nicholas TR</author>
                    <author order="11">Chechik M</author>
                    <author order="12">Hart SJ</author>
                    <author order="13">Turkenburg JP</author>
                    <author order="14">Blaza JN</author>
                    <author order="15">Beatty JT</author>
                    <author order="16">Fogg PC</author>
                    <author order="17">Antson AA</author>
                    <title>A stargate mechanism of&lt;i&gt;Microviridae&lt;/i&gt;genome delivery unveiled by cryogenic electron tomography</title>
                    <journal>bioRxiv</journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country>United States</country>
                    <year>2024</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1101/2024.06.11.598214</externalReferences>
                    <details>single particle analysis, raw eer movies</details>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Raw eer images of native Ebor particle</name>
        <directory>/data/microvirus_EPUver2_grid2</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>EER</headerFormat>
        <dataFormat>EER</dataFormat>
        <numImagesOrTiltSeries>954</numImagesOrTiltSeries>
        <framesPerImage>2870</framesPerImage>
        <voxelType>BIT</voxelType>
        <dimensions>
            <imageWidth>4096</imageWidth>
            <pixelWidth>1.2</pixelWidth>
            <imageHeight>4096</imageHeight>
            <pixelHeight>1.2</pixelHeight>
        </dimensions>
        <details>total dose 50 e/A^2
collected on Falcon 4, Cs=2.7mm, Voltage=200kV
mtf of detector and gain reference can be download from empty particle EMPIAR dataset</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
