<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-11906" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2024-01-26</depositionDate>
            <releaseDate>2024-07-12</releaseDate>
            <updateDate>2024-07-12</updateDate>
        </keyDates>
        <title>UFM1 ribosome E3 ligase complex bound to the 60S ribosomal subunit</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0001-7835-6005</authorORCID>
            <firstName>Linda</firstName>
            <lastName>Makhlouf</lastName>
            <organization type="academic">Astbury Centre for Structural Molecular Biology, University of Leeds</organization>
            <townOrCity>Leeds</townOrCity>
            <stateOrProvince>West Yorkshire</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>LS2 9JT</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0003-0239-5926</authorORCID>
            <firstName>Elton</firstName>
            <lastName>Zeqiraj</lastName>
            <organization type="academic">Astbury Centre for Structural Molecular Biology, University of Leeds</organization>
            <townOrCity>Leeds</townOrCity>
            <stateOrProvince>West Yorkshire</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>LS2 9JT</postOrZipCode>
        </principalInvestigator>
        <principalInvestigator private="true">
            <firstName>Yogesh</firstName>
            <lastName>Kulathu</lastName>
            <organization type="academic">MRC Protein Phosphorylation &amp; Ubiquitylation Unit, University of Dundee</organization>
            <street>Dow Street</street>
            <townOrCity>Dundee</townOrCity>
            <country>United Kingdom</country>
            <postOrZipCode>DD1 5EH</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0001-7835-6005">Makhlouf L</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>Wellcome Trust</fundingBody>
                <code>222531/Z/21/Z</code>
                <country>United Kingdom</country>
            </grantReference>
            <grantReference>
                <fundingBody>Wellcome Trust</fundingBody>
                <code>222372/Z/21/Z</code>
                <country>United Kingdom</country>
            </grantReference>
            <grantReference>
                <fundingBody>Biotechnology and Biological Sciences Research Council (BBSRC)</fundingBody>
                <code>BB/T008172/1</code>
                <country>United Kingdom</country>
            </grantReference>
            <grantReference>
                <fundingBody>European Research Council (ERC)</fundingBody>
                <code>677623</code>
                <country>United Kingdom</country>
            </grantReference>
            <grantReference>
                <fundingBody>Medical Research Council (MRC, United Kingdom)</fundingBody>
                <code>MC_UU_00018/3</code>
                <country>United Kingdom</country>
            </grantReference>
            <grantReference>
                <fundingBody>Wellcome Trust</fundingBody>
                <code>221524/Z/20/Z</code>
                <country>United Kingdom</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="TB">22.6</datasetSize>
        <entryDOI>10.6019/EMPIAR-11906</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-18381</emdbEntry>
            <emdbEntry>EMD-18382</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0001-7835-6005" order="1">Makhlouf L</author>
                    <author order="2">Peter JJ</author>
                    <author order="3">Magnussen HM</author>
                    <author order="4">Thakur R</author>
                    <author order="5">Millrine D</author>
                    <author order="6">Minshull TC</author>
                    <author order="7">Harrison G</author>
                    <author order="8">Varghese J</author>
                    <author order="9">Lamoliatte F</author>
                    <author order="10">Foglizzo M</author>
                    <author order="11">Macartney T</author>
                    <author order="12">Calabrese AN</author>
                    <author authorORCID="0000-0003-0239-5926" order="13">Zeqiraj E</author>
                    <author order="14">Kulathu Y</author>
                    <title>The UFM1 E3 ligase recognizes and releases 60S ribosomes from ER translocons</title>
                    <journal>Nature</journal>
                    <journalAbbreviation>Nature</journalAbbreviation>
                    <country></country>
                    <issue>8003</issue>
                    <volume>627</volume>
                    <firstPage>437</firstPage>
                    <lastPage>444</lastPage>
                    <year>2024</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1038/s41586-024-07093-w</externalReferences>
                    <externalReferences type="pubmed">38383789</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned multiframe micrographs in EER format of the UFM1 ribosome E3 ligase complex bound to the 60S ribosome subunit</name>
        <directory>/data/Images-Disc1</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>EER</headerFormat>
        <dataFormat>EER</dataFormat>
        <numImagesOrTiltSeries>59394</numImagesOrTiltSeries>
        <framesPerImage>819</framesPerImage>
        <voxelType>UNSIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>variable</imageWidth>
            <pixelWidth>0.74</pixelWidth>
            <imageHeight>variable</imageHeight>
            <pixelHeight>0.74</pixelHeight>
        </dimensions>
        <details>Dose per physical pixel/s of 6.85 used resulting in a total dose of 33.4 e/Å2. Defocus range of -0.2 to -2. For motion correction, 819 internal frames were grouped by 20 resulting in 42 EER fractions with a dose per frame of 0.8 e/A2. Gain reference file called "20221115_154105_EER_GainReference.gain".</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Aligned micrographs of the UFM1 ribosome E3 ligase complex bound to the 60S ribosome subunit</name>
        <directory>/data/job005/Raw_data</directory>
        <category>micrographs - single frame</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>59394</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>variable</imageWidth>
            <pixelWidth>variable</pixelWidth>
            <imageHeight>variable</imageHeight>
            <pixelHeight>variable</pixelHeight>
        </dimensions>
        <details>Raw movie frames are aligned with RELION's own implementation of the MotionCor2 algorithm using an EER fractionation of 20 and dose per frame of 0.8 e/A2. 5, 5 patches were used.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
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