<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-11899" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2024-02-12</depositionDate>
            <releaseDate>2024-05-16</releaseDate>
            <updateDate>2024-05-16</updateDate>
        </keyDates>
        <title>Cryo-ET dataset on lamellae of Dictyostelium discoideum cells [213 tilt-series in MRC format]</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0002-5457-4478</authorORCID>
            <firstName>Beata</firstName>
            <lastName>Turoňová</lastName>
            <organization type="academic">Max Planck Institute of Biophysics</organization>
            <street>Max-von-Laue-Strasse 3</street>
            <townOrCity>Frankfurt am Main</townOrCity>
            <stateOrProvince>Hessen</stateOrProvince>
            <country>Germany</country>
            <postOrZipCode>60438</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0002-5457-4478</authorORCID>
            <firstName>Beata</firstName>
            <lastName>Turoňová</lastName>
            <organization type="academic">Max Planck Institute of Biophysics, Department of Molecular Sociology</organization>
            <street>Max-von-Laue-Strasse 3</street>
            <townOrCity>Frankfurt am Main</townOrCity>
            <stateOrProvince>Hessen</stateOrProvince>
            <country>Germany</country>
            <postOrZipCode>60438</postOrZipCode>
        </principalInvestigator>
        <principalInvestigator private="true">
            <authorORCID>0000-0002-7397-1321</authorORCID>
            <firstName>Martin</firstName>
            <lastName>Beck</lastName>
            <organization type="academic">Max Planck Institute of Biophysics, Department of Molecular Sociology</organization>
            <street>Max-von-Laue-Strasse 3</street>
            <townOrCity>Frankfurt am Main</townOrCity>
            <stateOrProvince>Hessen</stateOrProvince>
            <country>Germany</country>
            <postOrZipCode>60438</postOrZipCode>
        </principalInvestigator>
        <principalInvestigator private="true">
            <authorORCID>0000-0001-7768-746X</authorORCID>
            <firstName>Gerhard</firstName>
            <lastName>Hummer</lastName>
            <organization type="academic">Max Planck Institute of Biophysics, Department of Theoreotical Biophysics</organization>
            <street>Max-von-Laue-Strasse 3</street>
            <townOrCity>Frankfurt am Main</townOrCity>
            <stateOrProvince>Hessen</stateOrProvince>
            <country>Germany</country>
            <postOrZipCode>60438</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-0615-572X">Tuijtel MW</author>
            <author authorORCID="0000-0002-4770-6313">Kreysing JP</author>
            <author authorORCID="0000-0002-6049-6664">Welsch S</author>
            <author authorORCID="0000-0001-7768-746X">Hummer G</author>
            <author authorORCID="0000-0002-7397-1321">Beck M</author>
            <author authorORCID="0000-0002-5457-4478">Turoňová B</author>
            <author authorORCID="0000-0003-1256-2206">Cruz-León S</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>Chan Zuckerberg Initiative</fundingBody>
                <code>2021-234666</code>
                <country>United States</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="GB">382.6</datasetSize>
        <entryDOI>10.6019/EMPIAR-11899</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>cell</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-19136</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0002-0615-572X" order="1">Tuijtel MW</author>
                    <author authorORCID="0000-0003-1256-2206" order="2">Cruz-León S</author>
                    <author authorORCID="0000-0002-4770-6313" order="3">Kreysing JP</author>
                    <author authorORCID="0000-0002-6049-6664" order="4">Welsch S</author>
                    <author authorORCID="0000-0001-7768-746X" order="5">Hummer G</author>
                    <author authorORCID="0000-0002-7397-1321" order="6">Beck M</author>
                    <author authorORCID="0000-0002-5457-4478" order="7">Turoňová B</author>
                    <title>Thinner is not always better: Optimizing cryo-lamellae for subtomogram averaging</title>
                    <journal>Science advances</journal>
                    <journalAbbreviation>Sci Adv</journalAbbreviation>
                    <country></country>
                    <issue>17</issue>
                    <volume>10</volume>
                    <year>2024</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1126/sciadv.adk6285</externalReferences>
                    <externalReferences type="pubmed">38669330</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Aligned tilt-series of Dictyostelium discoideum cells</name>
        <directory>/data</directory>
        <category>tilt series</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>213</numImagesOrTiltSeries>
        <framesPerImage>61</framesPerImage>
        <frameRange>
            <frameRangeMin>17</frameRangeMin>
            <frameRangeMax>61</frameRangeMax>
        </frameRange>
        <voxelType>UNSIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>4096</imageWidth>
            <pixelWidth>1.223</pixelWidth>
            <imageHeight>4096</imageHeight>
            <pixelHeight>1.223</pixelHeight>
        </dimensions>
        <details>Tilt-series were aimed to collect 61 tilts, for some fewer tilts were acquired. Tilt-series are sorted according to ascending tilt angle apart from +60 to -60 from lamella pre-tilt (8deg). mdoc files with metadata provided by SerialEM are also provided.
Tilts that were discarded during processing are specified in "tilt_cleaning.txt".
Alignment results from IMOD are provided as _dose-filt.xf files.
Coordinates to raw ribosome particle picks by template matching are provided in TM_SG_bin6_subtomos_3.1star, with coordinates with bin-factor of 6 corresponding to a pixel size of 7.3 Angstrom. Ribosome particle locations after 3D-classification are provided in Classification_relion_bin6_subtomos_3.1.star, with coordinates with bin-factor of 6 corresponding to a pixel size of 7.3 Angstrom.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
