<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-11896" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2024-02-08</depositionDate>
            <releaseDate>2024-04-12</releaseDate>
            <updateDate>2024-04-12</updateDate>
        </keyDates>
        <title>Cryo-electron tomography data of Emiliania huxleyi virus 201 for subtomogram averaging</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0003-4215-3315</authorORCID>
            <firstName>Pavel</firstName>
            <lastName>Plevka</lastName>
            <organization type="academic">Central European Institute of Technology (CEITEC) Masaryk University</organization>
            <street>Kamenice 753/5</street>
            <townOrCity>Brno</townOrCity>
            <country>Czech Republic</country>
            <postOrZipCode>62500</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0003-4215-3315</authorORCID>
            <firstName>Pavel</firstName>
            <lastName>Plevka</lastName>
            <organization type="academic">Central European Institute of Technology (CEITEC) Masaryk University</organization>
            <street>Kamenice 753/5</street>
            <townOrCity>Brno</townOrCity>
            <country>Czech Republic</country>
            <postOrZipCode>62500</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-5094-5040">Homola M</author>
            <author authorORCID="0000-0002-9789-1916">Büttner CR</author>
            <author authorORCID="0000-0002-1190-0210">Füzik T</author>
            <author authorORCID="0000-0003-4013-3898">Nováček J</author>
            <author authorORCID="0000-0001-7231-7742">Chaillet M</author>
            <author authorORCID="0000-0002-6044-2746">Förster F</author>
            <author authorORCID="0000-0003-4215-3315">Plevka P</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>European Research Council (ERC)</fundingBody>
                <code>101043454</code>
                <country>Czech Republic</country>
            </grantReference>
            <grantReference>
                <fundingBody>Grant Agency of the Czech Republic</fundingBody>
                <code>GX19-25982X</code>
                <country>Czech Republic</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="GB">294.8</datasetSize>
        <entryDOI>10.6019/EMPIAR-11896</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>virus</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-17649</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="true">
                    <author authorORCID="0000-0002-5094-5040" order="1">Homola M</author>
                    <author authorORCID="0000-0002-9789-1916" order="2">Büttner CR</author>
                    <author authorORCID="0000-0002-1190-0210" order="3">Füzik T</author>
                    <author authorORCID="0000-0003-4013-3898" order="4">Nováček J</author>
                    <author authorORCID="0000-0001-7231-7742" order="5">Chaillet M</author>
                    <author authorORCID="0000-0002-6044-2746" order="6">Förster F</author>
                    <author authorORCID="0000-0003-4215-3315" order="7">Plevka P</author>
                    <title>Structure and replication cycle of a virus infecting climate-modulating alga Emiliania huxleyi</title>
                    <journal>Science Advances</journal>
                    <journalAbbreviation>Sci. Adv.</journalAbbreviation>
                    <country>United States</country>
                    <year>2024</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1101/2023.06.30.547180</externalReferences>
                    <details>Information about the microscope settings and acquisition details are listed in the EMDB entry 17649.</details>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Raw multiframes movies of EhV-201 particles tilt-series</name>
        <directory>/data/Movies</directory>
        <category>tilt series</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>283</numImagesOrTiltSeries>
        <framesPerImage>33</framesPerImage>
        <frameRange>
            <frameRangeMin>0</frameRangeMin>
            <frameRangeMax>48</frameRangeMax>
        </frameRange>
        <voxelType>BIT</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>2.08</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>2.08</pixelHeight>
        </dimensions>
        <details>Dataset contains 283 tilt-series, each consisting of 33 tilts (+/- 48 deg with 3 deg increment), each containing 6 frames. Dataset details: Titan Krios G2 (Thermofisher Scientific) 300 kV; detector K3 with Bioquantum energy filter (Gatan); Pixel size: 2.08; Total dose: 80 e/A^2; Dose-symmetric collection scheme. Data are not motion-corrected nor gain-corrected. Each tilt "fileName.tif" is accompanied by "fileName.tif.mdoc" file with acquisition details. 
Gain file: data/Gain
mdoc tomo files: data/mdoc (to assemble the tilt-series from the individual tilts)
More information about the sample preparation and data acquisition can be found in the article (Homola et al. 2024 - Structure and replication cycle of a virus infecting climate-modulating alga Emiliania huxleyi) or in the EMDB deposition 17649.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
