<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-11828" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2023-08-02</depositionDate>
            <releaseDate>2024-10-09</releaseDate>
            <updateDate>2024-10-09</updateDate>
        </keyDates>
        <title>Purified Photoreceptor Cell Rootlet Tomograms</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0002-1319-847X</authorORCID>
            <firstName>Chris</firstName>
            <lastName>van Hoorn</lastName>
            <organization type="academic">MRC Laboratory of Molecular Biology</organization>
            <street>Francis Crick Ave</street>
            <townOrCity>Cambridge</townOrCity>
            <stateOrProvince>Cambridgeshire</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>CB02QH</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0001-7292-5430</authorORCID>
            <firstName>Andrew</firstName>
            <middleName>P</middleName>
            <lastName>Carter</lastName>
            <organization type="academic">MRC Laboratory of Molecular Biology</organization>
            <townOrCity>Cambridge</townOrCity>
            <country>United Kingdom</country>
            <postOrZipCode>CB2 0QH</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-1319-847X">van Hoorn C</author>
            <author authorORCID="0000-0001-7292-5430">Carter AP</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>Wellcome Trust</fundingBody>
                <code>210711/Z/18/Z</code>
                <country>United Kingdom</country>
            </grantReference>
            <grantReference>
                <fundingBody>Medical Research Council (MRC, United Kingdom)</fundingBody>
                <code>MC_UP_A025_1011</code>
                <country>United Kingdom</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="GB">440.0</datasetSize>
        <entryDOI>10.6019/EMPIAR-11828</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>cell</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-18121</emdbEntry>
            <emdbEntry>EMD-18122</emdbEntry>
            <emdbEntry>EMD-18123</emdbEntry>
            <emdbEntry>EMD-18124</emdbEntry>
            <emdbEntry>EMD-18125</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="true">
                    <author authorORCID="0000-0002-1319-847X" order="1">van Hoorn C</author>
                    <author order="2">Carter AP</author>
                    <title>A cryo-ET study of ciliary rootlet organization</title>
                    <journal>eLife</journal>
                    <journalAbbreviation>eLife</journalAbbreviation>
                    <country></country>
                    <year>2023</year>
                    <language>English</language>
                    <externalReferences type="doi">10.7554/eLife.91642.1</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Tomo_photoreceptorcell_isonet</name>
        <directory>/data/20190227_PRC/isonet</directory>
        <category>reconstructed volumes</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>1</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>1022</imageWidth>
            <pixelWidth>8.916</pixelWidth>
            <imageHeight>1440</imageHeight>
            <pixelHeight>8.916</pixelHeight>
        </dimensions>
        <details>Tomograms reconstructed using isonet</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>TS_photoreceptorcell</name>
        <directory>/data/20190227_PRC/rawdata</directory>
        <category>tilt series</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>41</numImagesOrTiltSeries>
        <framesPerImage>10</framesPerImage>
        <voxelType>UNSIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>3710</imageWidth>
            <pixelWidth>2.229</pixelWidth>
            <imageHeight>3838</imageHeight>
            <pixelHeight>2.229</pixelHeight>
        </dimensions>
        <details>Raw tomogram tifs</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Tomo_photoreceptor_deconv</name>
        <directory>/data/20190227_PRC/tomograms</directory>
        <category>reconstructed volumes</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>1</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>1022</imageWidth>
            <pixelWidth>8.916</pixelWidth>
            <imageHeight>1440</imageHeight>
            <pixelHeight>8.916</pixelHeight>
        </dimensions>
        <details>Tomograms reconstructed using TOMdeconv</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Tomo_purifiedrootlet_20190423_isonet</name>
        <directory>/data/20190423_purified_rootlet/isonet</directory>
        <category>reconstructed volumes</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>1</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>730</imageWidth>
            <pixelWidth>11.1</pixelWidth>
            <imageHeight>714</imageHeight>
            <pixelHeight>11.1</pixelHeight>
        </dimensions>
        <details>Tomograms reconstructed using isonet</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>TS_purifiedrootlet_20190423</name>
        <directory>/data/20190423_purified_rootlet/rawdata</directory>
        <category>tilt series</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>41</numImagesOrTiltSeries>
        <framesPerImage>8</framesPerImage>
        <voxelType>UNSIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>3710</imageWidth>
            <pixelWidth>1.388</pixelWidth>
            <imageHeight>3838</imageHeight>
            <pixelHeight>1.388</pixelHeight>
        </dimensions>
        <details>Raw tomogram tifs of purified rootlets</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Tomo_purifiedrootlet_20190423_deconv</name>
        <directory>/data/20190423_purified_rootlet/tomograms</directory>
        <category>reconstructed volumes</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>1</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>730</imageWidth>
            <pixelWidth>11.1</pixelWidth>
            <imageHeight>714</imageHeight>
            <pixelHeight>11.1</pixelHeight>
        </dimensions>
        <details>Tomograms of purified rootlets reconstructed with TOMdeconv</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Tomo_purifiedrootlet_20190423_isonet</name>
        <directory>/data/20190427_purified_rootlet/isonet</directory>
        <category>reconstructed volumes</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>1</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>730</imageWidth>
            <pixelWidth>11.1</pixelWidth>
            <imageHeight>714</imageHeight>
            <pixelHeight>11.1</pixelHeight>
        </dimensions>
        <details>Tomograms of purified rootlets reconstructed with Isonet</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>TS_purifiedrootlet_20190427</name>
        <directory>/data/20190427_purified_rootlet/rawdata</directory>
        <category>tilt series</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>41</numImagesOrTiltSeries>
        <framesPerImage>8</framesPerImage>
        <voxelType>UNSIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>3710</imageWidth>
            <pixelWidth>1.388</pixelWidth>
            <imageHeight>3838</imageHeight>
            <pixelHeight>1.388</pixelHeight>
        </dimensions>
        <details>Raw tomogram tifs of purified rootlets</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Tomo_purifiedrootlet_20190427_deconv</name>
        <directory>/data/20190427_purified_rootlet/tomograms</directory>
        <category>reconstructed volumes</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>1</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>730</imageWidth>
            <pixelWidth>11.1</pixelWidth>
            <imageHeight>714</imageHeight>
            <pixelHeight>11.1</pixelHeight>
        </dimensions>
        <details>Tomograms of purified rootlets reconstructed with TOMdeconv</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Tomo_purifiedrootlet_20200129_isonet</name>
        <directory>/data/20200129_purified_rootlet/isonet</directory>
        <category>reconstructed volumes</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>1</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>760</imageWidth>
            <pixelWidth>11.1</pixelWidth>
            <imageHeight>968</imageHeight>
            <pixelHeight>11.1</pixelHeight>
        </dimensions>
        <details>Tomograms of purified rootlets reconstructed with Isonet</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>TS_purifiedrootlet_20200129</name>
        <directory>/data/20200129_purified_rootlet/rawdata</directory>
        <category>tilt series</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>41</numImagesOrTiltSeries>
        <framesPerImage>10</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>11520</imageWidth>
            <pixelWidth>0.693</pixelWidth>
            <imageHeight>8184</imageHeight>
            <pixelHeight>0.693</pixelHeight>
        </dimensions>
        <details>Raw tomogram tifs of purified rootlets</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Tomo_purifiedrootlet_20200129_deconv</name>
        <directory>/data/20200129_purified_rootlet/tomograms</directory>
        <category>reconstructed volumes</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>1</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>760</imageWidth>
            <pixelWidth>11.1</pixelWidth>
            <imageHeight>968</imageHeight>
            <pixelHeight>11.1</pixelHeight>
        </dimensions>
        <details>Tomogram of purified rootlet reconstructed with TOMdeconv</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Tomo_purifiedrootlet_20200130_isonet</name>
        <directory>/data/20200130_purified_rootlet/isonet</directory>
        <category>reconstructed volumes</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>1</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>760</imageWidth>
            <pixelWidth>11.1</pixelWidth>
            <imageHeight>968</imageHeight>
            <pixelHeight>11.1</pixelHeight>
        </dimensions>
        <details>tomogram of purified rootlet reconstructed with Isonet</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>TS_purifiedrootlet_20200130</name>
        <directory>/data/20200130_purified_rootlet/rawdata</directory>
        <category>tilt series</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>41</numImagesOrTiltSeries>
        <framesPerImage>10</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>11520</imageWidth>
            <pixelWidth>0.693</pixelWidth>
            <imageHeight>8184</imageHeight>
            <pixelHeight>0.693</pixelHeight>
        </dimensions>
        <details>Raw tomogram tifs of purified rootlets</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Tomo_purifiedrootlets_20200130_deconv</name>
        <directory>/data/20200130_purified_rootlet/tomograms</directory>
        <category>reconstructed volumes</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>1</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>760</imageWidth>
            <pixelWidth>11.1</pixelWidth>
            <imageHeight>968</imageHeight>
            <pixelHeight>11.1</pixelHeight>
        </dimensions>
        <details>tomogram of purified rootlet reconstructed with TOMdeconv</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
