<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-11801" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2023-11-27</depositionDate>
            <releaseDate>2024-09-03</releaseDate>
            <updateDate>2024-09-03</updateDate>
        </keyDates>
        <title>AL amyloid fibril from the FOR103 light chain</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0002-9442-460X</authorORCID>
            <firstName>Matthias</firstName>
            <lastName>Schmidt</lastName>
            <organization type="academic">Institut für Proteinbiochemie, Universität Ulm</organization>
            <street>8/1 Helmholtzstrasse</street>
            <townOrCity>Ulm</townOrCity>
            <stateOrProvince>Baden Württemberg</stateOrProvince>
            <country>Germany</country>
            <postOrZipCode>89081</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0003-2123-6816</authorORCID>
            <firstName>Marcus</firstName>
            <lastName>Fändrich</lastName>
            <organization type="academic">Institut für Proteinbiochemie, Universität Ulm</organization>
            <street>8/1 Helmholtzstrasse</street>
            <townOrCity>Ulm</townOrCity>
            <stateOrProvince>Baden Württemberg</stateOrProvince>
            <country>Germany</country>
            <postOrZipCode>89081</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0009-0004-3946-3579">Pfeiffer PB</author>
            <author authorORCID="0000-0003-2513-1499">Karimi-Farsijani S</author>
            <author authorORCID="0000-0002-9442-460X">Schmidt M</author>
            <author authorORCID="0000-0003-2123-6816">Fändrich M</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>German Research Foundation (DFG)</fundingBody>
                <code>FA 456/23</code>
                <country>Germany</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="GB">504.3</datasetSize>
        <entryDOI>10.6019/EMPIAR-11801</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-19818</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="false" preprint="false">
                    <author authorORCID="0000-0003-2513-1499" order="1">Karimi-Farsijani S</author>
                    <author authorORCID="0009-0004-3946-3579" order="2">Pfeiffer PB</author>
                    <author order="3">Banerjee S</author>
                    <author order="4">Baur J</author>
                    <author order="5">Kuhn L</author>
                    <author order="6">Kupfer N</author>
                    <author order="7">Hegenbart U</author>
                    <author order="8">Schönland SO</author>
                    <author order="9">Wiese S</author>
                    <author order="10">Haupt C</author>
                    <author authorORCID="0000-0002-9442-460X" order="11">Schmidt M</author>
                    <author authorORCID="0000-0003-2123-6816" order="12">Fändrich M</author>
                    <title>Light chain mutations contribute to defining the fibril morphology  in systemic AL amyloidosis</title>
                    <journal></journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country></country>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned multi-frame micrographs of FOR103 amyloid fibrils</name>
        <directory>/data/micrographs</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>2788</numImagesOrTiltSeries>
        <framesPerImage>40</framesPerImage>
        <voxelType>UNSIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>3838</imageWidth>
            <pixelWidth>1.04</pixelWidth>
            <imageHeight>3710</imageHeight>
            <pixelHeight>1.04</pixelHeight>
        </dimensions>
        <details>Krios1 Quantum-K2
Cs 2.7
300kV EFTEM nanpprobe
x130k spot 8 beam size 650nm
c2=50  objective_aperture=100

GIF-K2 counting
10s exposure 40 frames
total dose at the sample 53.70e/A2
1 pixel = 1.04A
dose rate ~3-4 e/pix/s

defocus range -1.2 to -2.5

The gain reference (/data/micrographs/CountRef_map_0076_001.dm4) is not applied to the micrographs. The NOTES.txt file contains EM information. Thumbnails and power spectra (data/thumbs) as well as coordinates (/data/Manual_Pick) are provided.</details>
        <segmentationList/>
        <micrographsFilePattern>data/micrographs/*.tif</micrographsFilePattern>
        <pickedParticlesFilePattern>data/Manual_Pick/*.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/Manual_Pick</pickedParticlesDirectory>
    </imageSet>
</entry>
