<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-11743" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2023-10-16</depositionDate>
            <releaseDate>2025-06-26</releaseDate>
            <updateDate>2025-07-03</updateDate>
        </keyDates>
        <title>Cryo-EM SPA dataset of stably reduced Streptococcus pneumoniae NADPH oxidase with NADH</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0001-6341-9368</authorORCID>
            <firstName>Bonnie</firstName>
            <middleName>J</middleName>
            <lastName>Murphy</lastName>
            <organization type="academic">Redox and Metalloproteins, Max Planck Insitute of Physics</organization>
            <street>Max-von-Laue-Strasse 3</street>
            <townOrCity>Frankfurt am Main</townOrCity>
            <stateOrProvince>Hesse</stateOrProvince>
            <country>Germany</country>
            <postOrZipCode>60438</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0001-6341-9368</authorORCID>
            <firstName>Bonnie</firstName>
            <middleName>J</middleName>
            <lastName>Murphy</lastName>
            <organization type="academic">Redox and Metalloproteins, Max Planck Insitute of Physics</organization>
            <street>Max-von-Laue-Strasse 3</street>
            <townOrCity>Frankfurt am Main</townOrCity>
            <stateOrProvince>Hesse</stateOrProvince>
            <country>Germany</country>
            <postOrZipCode>60438</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-1657-7184">Dubach VRA</author>
            <author authorORCID="0009-0000-1951-1423">San Segundo-Acosta P</author>
            <author authorORCID="0000-0001-6341-9368">Murphy BJ</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>Max Planck Society</fundingBody>
                <code>N/A</code>
                <country>Germany</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="TB">11.1</datasetSize>
        <entryDOI>10.6019/EMPIAR-11743</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-18646</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0002-1657-7184" order="1">Dubach VRA</author>
                    <author authorORCID="0009-0000-1951-1423" order="2">San Segundo-Acosta P</author>
                    <author authorORCID="0000-0001-6341-9368" order="3">Murphy BJ</author>
                    <title>Structural and mechanistic insights into Streptococcus pneumoniae NADPH oxidase</title>
                    <journal>Nature structural &amp; molecular biology</journal>
                    <journalAbbreviation>Nat Struct Mol Biol</journalAbbreviation>
                    <country></country>
                    <year>2024</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1038/s41594-024-01348-w</externalReferences>
                    <externalReferences type="pubmed">39039317</externalReferences>
                    <details>Raw micrograph frames recorded in EER format with a total dose of 70 e/Å using a Falcon IV detector in counting mode on a 300 kV Titan Krios G4 microscope. A total of 938 EER frames were recorded and not gain corrected. Sample was frozen on a gold support grid (UltrAuFoil).</details>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned mutliframe non-gain-normalized EER movies of SpNOX collected on a Krios G4</name>
        <directory>/data/spNOX_NADHbound_anaerobic</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>EER</headerFormat>
        <dataFormat>EER</dataFormat>
        <numImagesOrTiltSeries>28120</numImagesOrTiltSeries>
        <framesPerImage>938</framesPerImage>
        <voxelType>BIT</voxelType>
        <dimensions>
            <imageWidth>4096</imageWidth>
            <pixelWidth>0.573</pixelWidth>
            <imageHeight>4096</imageHeight>
            <pixelHeight>0.573</pixelHeight>
        </dimensions>
        <details>Raw EER movies collected using a Krios G4 with a CFEG, Falcon 4 detector and Selectris X filter.

The EER movies contain 938 frames and the total exposure dose of the sample was 70 e/A2. Magnification used was 215kx with a pixel size of 0.573 Å. Energy slit was set to 10 eV. 

XML files to generate optics groups are provided as well as the gain reference.</details>
        <segmentationList/>
        <micrographsFilePattern>data/spNOX_NADHbound_anaerobic/movies_*/*.eer</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
