<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-11707" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2023-08-13</depositionDate>
            <releaseDate>2024-08-22</releaseDate>
            <updateDate>2024-08-22</updateDate>
        </keyDates>
        <title>Substrate-free AAA single-chained ClpX∆N protein in a complex with ClpP peptidase</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0002-1719-5399</authorORCID>
            <firstName>Alireza</firstName>
            <lastName>Ghanbarpour</lastName>
            <organization type="academic">MIT</organization>
            <street>77 Massachusetts Ave.</street>
            <townOrCity>Cambridge</townOrCity>
            <stateOrProvince>MA</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>02139</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0002-8858-8907</authorORCID>
            <firstName>Joseph</firstName>
            <middleName>H</middleName>
            <lastName>Davis</lastName>
            <organization type="academic">MIT</organization>
            <street>77 Massachusetts Ave.</street>
            <townOrCity>Cambridge</townOrCity>
            <stateOrProvince>MA</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>02139</postOrZipCode>
        </principalInvestigator>
        <principalInvestigator private="true">
            <authorORCID>0000-0002-1719-5399</authorORCID>
            <firstName>Robert</firstName>
            <middleName>T</middleName>
            <lastName>Sauer</lastName>
            <organization type="academic">MIT</organization>
            <street>77 Massachusetts Ave.</street>
            <townOrCity>Cambridge</townOrCity>
            <stateOrProvince>MA</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>02139</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-7485-029X">Ghanbarpour A</author>
            <author authorORCID="0000-0002-3193-0740">Cohen SE</author>
            <author authorORCID="0000-0003-3378-7447">Fei X</author>
            <author authorORCID="0000-0002-8858-8907">Davis JH</author>
            <author authorORCID="0000-0002-1719-5399">Sauer RT</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)</fundingBody>
                <code>R01-GM144542; R35-GM141517</code>
                <country>United States</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="GB">894.9</datasetSize>
        <entryDOI>10.6019/EMPIAR-11707</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-27946</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="false" preprint="false">
                    <author authorORCID="0000-0002-7485-029X" order="1">Ghanbarpour A</author>
                    <author authorORCID="0000-0002-3193-0740" order="2">Cohen SE</author>
                    <author authorORCID="0000-0003-3378-7447" order="3">Fei X</author>
                    <author authorORCID="0000-0002-1719-5399" order="4">Sauer RT</author>
                    <author authorORCID="0000-0002-8858-8907" order="5">Davis JH</author>
                    <editor authorORCID="0000-0002-8858-8907" order="1">Davis JH</editor>
                    <editor authorORCID="0000-0002-1719-5399" order="2">Sauer RT</editor>
                    <title>A closed translocation channel in the substrate-free AAA+ ClpXP protease diminishes rogue degradation</title>
                    <journal>Nature Communications</journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country></country>
                    <year>2023</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1101/2022.08.27.505532</externalReferences>
                </journalCitation>
            </universalCitation>
            <universalCitation>
                <journalCitation published="true" preprint="true">
                    <author authorORCID="0000-0002-7485-029X" order="1">Ghanbarpour A</author>
                    <author authorORCID="0000-0002-3193-0740" order="2">Cohen SE</author>
                    <author authorORCID="0000-0003-3378-7447" order="3">Fei X</author>
                    <author order="4">Bell TA</author>
                    <author authorORCID="0000-0002-0737-3411" order="5">Baker TA</author>
                    <author authorORCID="0000-0002-8858-8907" order="6">Davis JH</author>
                    <author authorORCID="0000-0002-1719-5399" order="7">Sauer RT</author>
                    <editor authorORCID="0000-0002-8858-8907" order="1">Davis JH</editor>
                    <editor authorORCID="0000-0002-1719-5399" order="2">Sauer RT</editor>
                    <title>A closed translocation channel in the substrate-free AAA+ ClpXP protease diminishes rogue degradation</title>
                    <journal>bioRxiv</journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country></country>
                    <year>2022</year>
                    <externalReferences type="doi">10.1101/2022.08.27.505532</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned Multiframes Micrographs</name>
        <directory>/data</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>2405</numImagesOrTiltSeries>
        <framesPerImage>30</framesPerImage>
        <frameRange>
            <frameRangeMin>1</frameRangeMin>
            <frameRangeMax>30</frameRangeMax>
        </frameRange>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>8184</imageWidth>
            <pixelWidth>0.416</pixelWidth>
            <imageHeight>11520</imageHeight>
            <pixelHeight>0.416</pixelHeight>
        </dimensions>
        <details>Defocus range (min, max, step):-0.75, -2.5, -0.25
Total exposure on specimen: 49.39 el/A2 
Objective lens spherical aberration (Cs): 2.7mm
Acceleration voltage: 300kV
uncalibrated pixel size: 0.435 Å
calibrated pixel size: 0.416 Å</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Particle stacks of substrate-free ClpX(deltaN domain).ClpP (singly capped)</name>
        <directory>/data/Particles_EMD-27941</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>49824</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>300</imageWidth>
            <pixelWidth>1.305</pixelWidth>
            <imageHeight>300</imageHeight>
            <pixelHeight>1.305</pixelHeight>
        </dimensions>
        <details>Final Particle stack for EMD-27941 (singly capped ClpX-deltaN.ClpP)</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Particle stacks of substrate-free ClpX(delta-N domain).ClpP (doubly capped)</name>
        <directory>/data/Particles_EMD-27946</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>171869</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>256</imageWidth>
            <pixelWidth>1.106</pixelWidth>
            <imageHeight>256</imageHeight>
            <pixelHeight>1.106</pixelHeight>
        </dimensions>
        <details>Final Particle stack for EMD-27946 (doubly capped ClpX-deltaN.ClpP)</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
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