Working on 267-60_003.tif with 10 thread(s).

Movie size: X = 3838 Y = 3710 N = 80
Frames to be used: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80
Frame grouping: n_frames = 80, requested group size = 1
 | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 | 75 | 76 | 77 | 78 | 79 | 80 | 
interpolate_shifts = 0

In unaligned sum, Mean = 31.0128 Std = 5.79626 Hotpixel threshold = 65.7904
Detected 334 hot pixels to be corrected.
Fixed hot pixels.

Global alignment:
 Iteration 1: RMSD = 1.35381 px
 Iteration 2: RMSD = 0.19219 px

Local alignments:
Patches: X = 5 Y = 5
Patch (1, 1): 1 / 25, X range = [0, 766), Y range = [0, 742), Center = (382, 370)
 Iteration 1: RMSD = 44.7855 px
 Iteration 2: RMSD = 43.0778 px
 Iteration 3: RMSD = 40.3101 px
 Iteration 4: RMSD = 42.456 px
 Iteration 5: RMSD = 40.4152 px
Patch (1, 2): 2 / 25, X range = [767, 1533), Y range = [0, 742), Center = (1149, 370)
 Iteration 1: RMSD = 65.0585 px
 Iteration 2: RMSD = 43.3252 px
 Iteration 3: RMSD = 41.1807 px
 Iteration 4: RMSD = 39.5905 px
 Iteration 5: RMSD = 38.1663 px
Patch (1, 3): 3 / 25, X range = [1534, 2300), Y range = [0, 742), Center = (1916, 370)
 Iteration 1: RMSD = 35.3147 px
 Iteration 2: RMSD = 30.5012 px
 Iteration 3: RMSD = 29.4989 px
 Iteration 4: RMSD = 30.1979 px
 Iteration 5: RMSD = 29.1415 px
Patch (1, 4): 4 / 25, X range = [2301, 3067), Y range = [0, 742), Center = (2683, 370)
 Iteration 1: RMSD = 50.269 px
 Iteration 2: RMSD = 36.7904 px
 Iteration 3: RMSD = 35.2717 px
 Iteration 4: RMSD = 36.4721 px
 Iteration 5: RMSD = 35.2397 px
Patch (1, 5): 5 / 25, X range = [3068, 3834), Y range = [0, 742), Center = (3450, 370)
 Iteration 1: RMSD = 29.9094 px
 Iteration 2: RMSD = 22.8607 px
 Iteration 3: RMSD = 19.2734 px
 Iteration 4: RMSD = 19.2433 px
 Iteration 5: RMSD = 19.0604 px
Patch (2, 1): 6 / 25, X range = [0, 766), Y range = [742, 1484), Center = (382, 1112)
 Iteration 1: RMSD = 37.0595 px
 Iteration 2: RMSD = 39.472 px
 Iteration 3: RMSD = 37.9075 px
 Iteration 4: RMSD = 35.3287 px
 Iteration 5: RMSD = 37.1861 px
Patch (2, 2): 7 / 25, X range = [767, 1533), Y range = [742, 1484), Center = (1149, 1112)
 Iteration 1: RMSD = 46.5748 px
 Iteration 2: RMSD = 62.5664 px
 Iteration 3: RMSD = 63.996 px
 Iteration 4: RMSD = 61.7291 px
 Iteration 5: RMSD = 64.8254 px
Patch (2, 3): 8 / 25, X range = [1534, 2300), Y range = [742, 1484), Center = (1916, 1112)
 Iteration 1: RMSD = 61.7496 px
 Iteration 2: RMSD = 44.6239 px
 Iteration 3: RMSD = 67.313 px
 Iteration 4: RMSD = 69.4608 px
 Iteration 5: RMSD = 64.3125 px
Patch (2, 4): 9 / 25, X range = [2301, 3067), Y range = [742, 1484), Center = (2683, 1112)
 Iteration 1: RMSD = 50.1406 px
 Iteration 2: RMSD = 64.9756 px
 Iteration 3: RMSD = 69.0545 px
 Iteration 4: RMSD = 48.4184 px
 Iteration 5: RMSD = 48.1967 px
Patch (2, 5): 10 / 25, X range = [3068, 3834), Y range = [742, 1484), Center = (3450, 1112)
 Iteration 1: RMSD = 28.8005 px
 Iteration 2: RMSD = 24.0722 px
 Iteration 3: RMSD = 23.1302 px
 Iteration 4: RMSD = 23.1234 px
 Iteration 5: RMSD = 23.6311 px
Patch (3, 1): 11 / 25, X range = [0, 766), Y range = [1484, 2226), Center = (382, 1854)
 Iteration 1: RMSD = 52.989 px
 Iteration 2: RMSD = 52.0295 px
 Iteration 3: RMSD = 45.0979 px
 Iteration 4: RMSD = 44.7063 px
 Iteration 5: RMSD = 43.2136 px
Patch (3, 2): 12 / 25, X range = [767, 1533), Y range = [1484, 2226), Center = (1149, 1854)
 Iteration 1: RMSD = 60.0548 px
 Iteration 2: RMSD = 57.0463 px
 Iteration 3: RMSD = 40.9724 px
 Iteration 4: RMSD = 59.8422 px
 Iteration 5: RMSD = 54.8157 px
Patch (3, 3): 13 / 25, X range = [1534, 2300), Y range = [1484, 2226), Center = (1916, 1854)
 Iteration 1: RMSD = 60.7954 px
 Iteration 2: RMSD = 62.6273 px
 Iteration 3: RMSD = 58.5378 px
 Iteration 4: RMSD = 31.7004 px
 Iteration 5: RMSD = 30.9339 px
Patch (3, 4): 14 / 25, X range = [2301, 3067), Y range = [1484, 2226), Center = (2683, 1854)
 Iteration 1: RMSD = 53.6196 px
 Iteration 2: RMSD = 51.7959 px
 Iteration 3: RMSD = 41.04 px
 Iteration 4: RMSD = 41.2578 px
 Iteration 5: RMSD = 40.7831 px
Patch (3, 5): 15 / 25, X range = [3068, 3834), Y range = [1484, 2226), Center = (3450, 1854)
 Iteration 1: RMSD = 27.4519 px
 Iteration 2: RMSD = 49.49 px
 Iteration 3: RMSD = 45.781 px
 Iteration 4: RMSD = 44.8736 px
 Iteration 5: RMSD = 40.4736 px
Patch (4, 1): 16 / 25, X range = [0, 766), Y range = [2226, 2968), Center = (382, 2596)
 Iteration 1: RMSD = 54.1306 px
 Iteration 2: RMSD = 40.8814 px
 Iteration 3: RMSD = 41.1901 px
 Iteration 4: RMSD = 40.4175 px
 Iteration 5: RMSD = 36.3593 px
Patch (4, 2): 17 / 25, X range = [767, 1533), Y range = [2226, 2968), Center = (1149, 2596)
 Iteration 1: RMSD = 53.5911 px
 Iteration 2: RMSD = 51.8212 px
 Iteration 3: RMSD = 52.347 px
 Iteration 4: RMSD = 49.7283 px
 Iteration 5: RMSD = 48.7742 px
Patch (4, 3): 18 / 25, X range = [1534, 2300), Y range = [2226, 2968), Center = (1916, 2596)
 Iteration 1: RMSD = 60.9641 px
 Iteration 2: RMSD = 57.4329 px
 Iteration 3: RMSD = 55.1412 px
 Iteration 4: RMSD = 56.2766 px
 Iteration 5: RMSD = 57.6879 px
Patch (4, 4): 19 / 25, X range = [2301, 3067), Y range = [2226, 2968), Center = (2683, 2596)
 Iteration 1: RMSD = 59.537 px
 Iteration 2: RMSD = 63.5546 px
 Iteration 3: RMSD = 62.0131 px
 Iteration 4: RMSD = 62.3714 px
 Iteration 5: RMSD = 63.6408 px
Patch (4, 5): 20 / 25, X range = [3068, 3834), Y range = [2226, 2968), Center = (3450, 2596)
 Iteration 1: RMSD = 38.1703 px
 Iteration 2: RMSD = 34.877 px
 Iteration 3: RMSD = 52.2534 px
 Iteration 4: RMSD = 51.9411 px
 Iteration 5: RMSD = 53.9313 px
Patch (5, 1): 21 / 25, X range = [0, 766), Y range = [2968, 3710), Center = (382, 3338)
 Iteration 1: RMSD = 0.711433 px
 Iteration 2: RMSD = 0.172149 px
Patch (5, 2): 22 / 25, X range = [767, 1533), Y range = [2968, 3710), Center = (1149, 3338)
 Iteration 1: RMSD = 42.4415 px
 Iteration 2: RMSD = 43.9698 px
 Iteration 3: RMSD = 46.6089 px
 Iteration 4: RMSD = 47.8545 px
 Iteration 5: RMSD = 47.1071 px
Patch (5, 3): 23 / 25, X range = [1534, 2300), Y range = [2968, 3710), Center = (1916, 3338)
 Iteration 1: RMSD = 37.6204 px
 Iteration 2: RMSD = 32.6477 px
 Iteration 3: RMSD = 29.5569 px
 Iteration 4: RMSD = 24.9289 px
 Iteration 5: RMSD = 24.2741 px
Patch (5, 4): 24 / 25, X range = [2301, 3067), Y range = [2968, 3710), Center = (2683, 3338)
 Iteration 1: RMSD = 58.5241 px
 Iteration 2: RMSD = 53.8605 px
 Iteration 3: RMSD = 51.1789 px
 Iteration 4: RMSD = 47.7777 px
 Iteration 5: RMSD = 48.1929 px
Patch (5, 5): 25 / 25, X range = [3068, 3834), Y range = [2968, 3710), Center = (3450, 3338)
 Iteration 1: RMSD = 53.2473 px
 Iteration 2: RMSD = 52.304 px
 Iteration 3: RMSD = 49.3339 px
 Iteration 4: RMSD = 48.1602 px
 Iteration 5: RMSD = 49.3657 px

Polynomial fit RMSD: X = 0.194428 px Y = 0.361188 px
Summing frames after dose weighting: ................................................................................ done
Written aligned and dose-weighted sum to MotionCorr/job002/267-60_003.mrc