Working on 254-108_002.tif with 10 thread(s).

Movie size: X = 3838 Y = 3710 N = 80
Frames to be used: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80
Frame grouping: n_frames = 80, requested group size = 1
 | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 | 75 | 76 | 77 | 78 | 79 | 80 | 
interpolate_shifts = 0

In unaligned sum, Mean = 27.6939 Std = 5.64189 Hotpixel threshold = 61.5453
Detected 260 hot pixels to be corrected.
Fixed hot pixels.

Global alignment:
 Iteration 1: RMSD = 10.7633 px
 Iteration 2: RMSD = 0.44311 px

Local alignments:
Patches: X = 5 Y = 5
Patch (1, 1): 1 / 25, X range = [0, 766), Y range = [0, 742), Center = (382, 370)
 Iteration 1: RMSD = 28.4015 px
 Iteration 2: RMSD = 1.80609 px
 Iteration 3: RMSD = 1.2293 px
 Iteration 4: RMSD = 0.521741 px
 Iteration 5: RMSD = 0.784804 px
Patch (1, 2): 2 / 25, X range = [767, 1533), Y range = [0, 742), Center = (1149, 370)
 Iteration 1: RMSD = 52.1243 px
 Iteration 2: RMSD = 39.773 px
 Iteration 3: RMSD = 9.70115 px
 Iteration 4: RMSD = 5.3458 px
 Iteration 5: RMSD = 5.35465 px
Patch (1, 3): 3 / 25, X range = [1534, 2300), Y range = [0, 742), Center = (1916, 370)
 Iteration 1: RMSD = 5.83829 px
 Iteration 2: RMSD = 1.46595 px
 Iteration 3: RMSD = 5.78185 px
 Iteration 4: RMSD = 0.48811 px
Patch (1, 4): 4 / 25, X range = [2301, 3067), Y range = [0, 742), Center = (2683, 370)
 Iteration 1: RMSD = 6.81603 px
 Iteration 2: RMSD = 1.17604 px
 Iteration 3: RMSD = 0.458993 px
Patch (1, 5): 5 / 25, X range = [3068, 3834), Y range = [0, 742), Center = (3450, 370)
 Iteration 1: RMSD = 3.35772 px
 Iteration 2: RMSD = 0.682839 px
 Iteration 3: RMSD = 0.217855 px
Patch (2, 1): 6 / 25, X range = [0, 766), Y range = [742, 1484), Center = (382, 1112)
 Iteration 1: RMSD = 21.5222 px
 Iteration 2: RMSD = 6.82532 px
 Iteration 3: RMSD = 6.54486 px
 Iteration 4: RMSD = 6.6439 px
 Iteration 5: RMSD = 6.47171 px
Patch (2, 2): 7 / 25, X range = [767, 1533), Y range = [742, 1484), Center = (1149, 1112)
 Iteration 1: RMSD = 22.1855 px
 Iteration 2: RMSD = 16.3647 px
 Iteration 3: RMSD = 11.7032 px
 Iteration 4: RMSD = 9.59739 px
 Iteration 5: RMSD = 9.41603 px
Patch (2, 3): 8 / 25, X range = [1534, 2300), Y range = [742, 1484), Center = (1916, 1112)
 Iteration 1: RMSD = 5.12855 px
 Iteration 2: RMSD = 1.19687 px
 Iteration 3: RMSD = 0.878451 px
 Iteration 4: RMSD = 0.49713 px
Patch (2, 4): 9 / 25, X range = [2301, 3067), Y range = [742, 1484), Center = (2683, 1112)
 Iteration 1: RMSD = 7.02876 px
 Iteration 2: RMSD = 1.13001 px
 Iteration 3: RMSD = 0.526482 px
 Iteration 4: RMSD = 0.422949 px
Patch (2, 5): 10 / 25, X range = [3068, 3834), Y range = [742, 1484), Center = (3450, 1112)
 Iteration 1: RMSD = 3.7733 px
 Iteration 2: RMSD = 1.43014 px
 Iteration 3: RMSD = 0.578613 px
 Iteration 4: RMSD = 0.195751 px
Patch (3, 1): 11 / 25, X range = [0, 766), Y range = [1484, 2226), Center = (382, 1854)
 Iteration 1: RMSD = 17.6705 px
 Iteration 2: RMSD = 40.8057 px
 Iteration 3: RMSD = 40.1368 px
 Iteration 4: RMSD = 40.7262 px
 Iteration 5: RMSD = 40.9985 px
Patch (3, 2): 12 / 25, X range = [767, 1533), Y range = [1484, 2226), Center = (1149, 1854)
 Iteration 1: RMSD = 9.41535 px
 Iteration 2: RMSD = 6.1305 px
 Iteration 3: RMSD = 5.10564 px
 Iteration 4: RMSD = 4.81908 px
 Iteration 5: RMSD = 4.83466 px
Patch (3, 3): 13 / 25, X range = [1534, 2300), Y range = [1484, 2226), Center = (1916, 1854)
 Iteration 1: RMSD = 6.40268 px
 Iteration 2: RMSD = 4.02487 px
 Iteration 3: RMSD = 0.748056 px
 Iteration 4: RMSD = 1.06143 px
 Iteration 5: RMSD = 1.0137 px
Patch (3, 4): 14 / 25, X range = [2301, 3067), Y range = [1484, 2226), Center = (2683, 1854)
 Iteration 1: RMSD = 7.3866 px
 Iteration 2: RMSD = 1.25998 px
 Iteration 3: RMSD = 0.453528 px
Patch (3, 5): 15 / 25, X range = [3068, 3834), Y range = [1484, 2226), Center = (3450, 1854)
 Iteration 1: RMSD = 2.01575 px
 Iteration 2: RMSD = 0.716176 px
 Iteration 3: RMSD = 0.192606 px
Patch (4, 1): 16 / 25, X range = [0, 766), Y range = [2226, 2968), Center = (382, 2596)
 Iteration 1: RMSD = 10.2089 px
 Iteration 2: RMSD = 6.97489 px
 Iteration 3: RMSD = 7.36325 px
 Iteration 4: RMSD = 0.928865 px
 Iteration 5: RMSD = 0.437116 px
Patch (4, 2): 17 / 25, X range = [767, 1533), Y range = [2226, 2968), Center = (1149, 2596)
 Iteration 1: RMSD = 7.71168 px
 Iteration 2: RMSD = 1.25496 px
 Iteration 3: RMSD = 0.957893 px
 Iteration 4: RMSD = 0.822731 px
 Iteration 5: RMSD = 0.493302 px
Patch (4, 3): 18 / 25, X range = [1534, 2300), Y range = [2226, 2968), Center = (1916, 2596)
 Iteration 1: RMSD = 8.47404 px
 Iteration 2: RMSD = 1.08823 px
 Iteration 3: RMSD = 0.405256 px
Patch (4, 4): 19 / 25, X range = [2301, 3067), Y range = [2226, 2968), Center = (2683, 2596)
 Iteration 1: RMSD = 12.4342 px
 Iteration 2: RMSD = 0.920773 px
 Iteration 3: RMSD = 0.50012 px
 Iteration 4: RMSD = 0.171932 px
Patch (4, 5): 20 / 25, X range = [3068, 3834), Y range = [2226, 2968), Center = (3450, 2596)
 Iteration 1: RMSD = 3.22827 px
 Iteration 2: RMSD = 0.722592 px
 Iteration 3: RMSD = 0.251951 px
Patch (5, 1): 21 / 25, X range = [0, 766), Y range = [2968, 3710), Center = (382, 3338)
 Iteration 1: RMSD = 7.0544 px
 Iteration 2: RMSD = 1.89928 px
 Iteration 3: RMSD = 2.62659 px
 Iteration 4: RMSD = 7.51772 px
 Iteration 5: RMSD = 7.53786 px
Patch (5, 2): 22 / 25, X range = [767, 1533), Y range = [2968, 3710), Center = (1149, 3338)
 Iteration 1: RMSD = 12.4389 px
 Iteration 2: RMSD = 3.15253 px
 Iteration 3: RMSD = 2.8692 px
 Iteration 4: RMSD = 2.73709 px
 Iteration 5: RMSD = 2.72173 px
Patch (5, 3): 23 / 25, X range = [1534, 2300), Y range = [2968, 3710), Center = (1916, 3338)
 Iteration 1: RMSD = 8.0617 px
 Iteration 2: RMSD = 4.89869 px
 Iteration 3: RMSD = 0.866847 px
 Iteration 4: RMSD = 0.40651 px
Patch (5, 4): 24 / 25, X range = [2301, 3067), Y range = [2968, 3710), Center = (2683, 3338)
 Iteration 1: RMSD = 6.62752 px
 Iteration 2: RMSD = 0.863424 px
 Iteration 3: RMSD = 0.345739 px
Patch (5, 5): 25 / 25, X range = [3068, 3834), Y range = [2968, 3710), Center = (3450, 3338)
 Iteration 1: RMSD = 1.98992 px
 Iteration 2: RMSD = 0.394673 px

Polynomial fit RMSD: X = 5.29981 px Y = 3.81311 px
Summing frames after dose weighting: ................................................................................ done
Written aligned and dose-weighted sum to MotionCorr/job002/254-108_002.mrc