Working on 165-36_002.tif with 10 thread(s).

Movie size: X = 3838 Y = 3710 N = 80
Frames to be used: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80
Frame grouping: n_frames = 80, requested group size = 1
 | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 | 75 | 76 | 77 | 78 | 79 | 80 | 
interpolate_shifts = 0

In unaligned sum, Mean = 30.7361 Std = 5.67835 Hotpixel threshold = 64.8062
Detected 330 hot pixels to be corrected.
Fixed hot pixels.

Global alignment:
 Iteration 1: RMSD = 4.39115 px
 Iteration 2: RMSD = 4.99296 px
 Iteration 3: RMSD = 0.952902 px
 Iteration 4: RMSD = 0.554231 px
 Iteration 5: RMSD = 0.462083 px

Local alignments:
Patches: X = 5 Y = 5
Patch (1, 1): 1 / 25, X range = [0, 766), Y range = [0, 742), Center = (382, 370)
 Iteration 1: RMSD = 55.5884 px
 Iteration 2: RMSD = 51.2926 px
 Iteration 3: RMSD = 48.0915 px
 Iteration 4: RMSD = 46.3467 px
 Iteration 5: RMSD = 46.2267 px
Patch (1, 2): 2 / 25, X range = [767, 1533), Y range = [0, 742), Center = (1149, 370)
 Iteration 1: RMSD = 56.8171 px
 Iteration 2: RMSD = 63.4295 px
 Iteration 3: RMSD = 63.5868 px
 Iteration 4: RMSD = 30.7037 px
 Iteration 5: RMSD = 30.6085 px
Patch (1, 3): 3 / 25, X range = [1534, 2300), Y range = [0, 742), Center = (1916, 370)
 Iteration 1: RMSD = 55.3642 px
 Iteration 2: RMSD = 34.8003 px
 Iteration 3: RMSD = 36.8207 px
 Iteration 4: RMSD = 36.5762 px
 Iteration 5: RMSD = 33.0831 px
Patch (1, 4): 4 / 25, X range = [2301, 3067), Y range = [0, 742), Center = (2683, 370)
 Iteration 1: RMSD = 32.2465 px
 Iteration 2: RMSD = 28.7465 px
 Iteration 3: RMSD = 25.4328 px
 Iteration 4: RMSD = 23.402 px
 Iteration 5: RMSD = 25.211 px
Patch (1, 5): 5 / 25, X range = [3068, 3834), Y range = [0, 742), Center = (3450, 370)
 Iteration 1: RMSD = 25.01 px
 Iteration 2: RMSD = 26.2526 px
 Iteration 3: RMSD = 24.6952 px
 Iteration 4: RMSD = 29.8076 px
 Iteration 5: RMSD = 25.637 px
Patch (2, 1): 6 / 25, X range = [0, 766), Y range = [742, 1484), Center = (382, 1112)
 Iteration 1: RMSD = 35.2634 px
 Iteration 2: RMSD = 37.0785 px
 Iteration 3: RMSD = 36.1764 px
 Iteration 4: RMSD = 35.4279 px
 Iteration 5: RMSD = 34.5699 px
Patch (2, 2): 7 / 25, X range = [767, 1533), Y range = [742, 1484), Center = (1149, 1112)
 Iteration 1: RMSD = 71.5234 px
 Iteration 2: RMSD = 62.4158 px
 Iteration 3: RMSD = 60.0205 px
 Iteration 4: RMSD = 37.3566 px
 Iteration 5: RMSD = 36.8422 px
Patch (2, 3): 8 / 25, X range = [1534, 2300), Y range = [742, 1484), Center = (1916, 1112)
 Iteration 1: RMSD = 56.3463 px
 Iteration 2: RMSD = 42.0023 px
 Iteration 3: RMSD = 39.6638 px
 Iteration 4: RMSD = 37.9551 px
 Iteration 5: RMSD = 34.7018 px
Patch (2, 4): 9 / 25, X range = [2301, 3067), Y range = [742, 1484), Center = (2683, 1112)
 Iteration 1: RMSD = 39.2439 px
 Iteration 2: RMSD = 34.6451 px
 Iteration 3: RMSD = 33.3678 px
 Iteration 4: RMSD = 31.7311 px
 Iteration 5: RMSD = 32.0375 px
Patch (2, 5): 10 / 25, X range = [3068, 3834), Y range = [742, 1484), Center = (3450, 1112)
 Iteration 1: RMSD = 38.4076 px
 Iteration 2: RMSD = 35.4381 px
 Iteration 3: RMSD = 37.4704 px
 Iteration 4: RMSD = 32.4995 px
 Iteration 5: RMSD = 30.9507 px
Patch (3, 1): 11 / 25, X range = [0, 766), Y range = [1484, 2226), Center = (382, 1854)
 Iteration 1: RMSD = 65.8715 px
 Iteration 2: RMSD = 63.2882 px
 Iteration 3: RMSD = 56.4962 px
 Iteration 4: RMSD = 53.6478 px
 Iteration 5: RMSD = 54.8342 px
Patch (3, 2): 12 / 25, X range = [767, 1533), Y range = [1484, 2226), Center = (1149, 1854)
 Iteration 1: RMSD = 50.1191 px
 Iteration 2: RMSD = 45.4103 px
 Iteration 3: RMSD = 43.583 px
 Iteration 4: RMSD = 42.1101 px
 Iteration 5: RMSD = 41.1088 px
Patch (3, 3): 13 / 25, X range = [1534, 2300), Y range = [1484, 2226), Center = (1916, 1854)
 Iteration 1: RMSD = 64.4936 px
 Iteration 2: RMSD = 42.6978 px
 Iteration 3: RMSD = 36.3171 px
 Iteration 4: RMSD = 35.3028 px
 Iteration 5: RMSD = 36.5385 px
Patch (3, 4): 14 / 25, X range = [2301, 3067), Y range = [1484, 2226), Center = (2683, 1854)
 Iteration 1: RMSD = 38.2561 px
 Iteration 2: RMSD = 35.8138 px
 Iteration 3: RMSD = 35.5915 px
 Iteration 4: RMSD = 33.9292 px
 Iteration 5: RMSD = 31.6468 px
Patch (3, 5): 15 / 25, X range = [3068, 3834), Y range = [1484, 2226), Center = (3450, 1854)
 Iteration 1: RMSD = 46.8795 px
 Iteration 2: RMSD = 49.634 px
 Iteration 3: RMSD = 51.3702 px
 Iteration 4: RMSD = 52.2349 px
 Iteration 5: RMSD = 52.7004 px
Patch (4, 1): 16 / 25, X range = [0, 766), Y range = [2226, 2968), Center = (382, 2596)
 Iteration 1: RMSD = 39.6439 px
 Iteration 2: RMSD = 36.7971 px
 Iteration 3: RMSD = 34.95 px
 Iteration 4: RMSD = 35.009 px
 Iteration 5: RMSD = 34.2973 px
Patch (4, 2): 17 / 25, X range = [767, 1533), Y range = [2226, 2968), Center = (1149, 2596)
 Iteration 1: RMSD = 74.0546 px
 Iteration 2: RMSD = 71.72 px
 Iteration 3: RMSD = 38.6057 px
 Iteration 4: RMSD = 39.8148 px
 Iteration 5: RMSD = 35.2193 px
Patch (4, 3): 18 / 25, X range = [1534, 2300), Y range = [2226, 2968), Center = (1916, 2596)
 Iteration 1: RMSD = 48.4204 px
 Iteration 2: RMSD = 69.9643 px
 Iteration 3: RMSD = 64.6296 px
 Iteration 4: RMSD = 35.3402 px
 Iteration 5: RMSD = 34.7817 px
Patch (4, 4): 19 / 25, X range = [2301, 3067), Y range = [2226, 2968), Center = (2683, 2596)
 Iteration 1: RMSD = 56.7804 px
 Iteration 2: RMSD = 57.6365 px
 Iteration 3: RMSD = 55.6478 px
 Iteration 4: RMSD = 53.9628 px
 Iteration 5: RMSD = 53.1626 px
Patch (4, 5): 20 / 25, X range = [3068, 3834), Y range = [2226, 2968), Center = (3450, 2596)
 Iteration 1: RMSD = 32.8227 px
 Iteration 2: RMSD = 41.6801 px
 Iteration 3: RMSD = 48.9477 px
 Iteration 4: RMSD = 49.4821 px
 Iteration 5: RMSD = 53.9216 px
Patch (5, 1): 21 / 25, X range = [0, 766), Y range = [2968, 3710), Center = (382, 3338)
 Iteration 1: RMSD = 78.4385 px
 Iteration 2: RMSD = 30.8959 px
 Iteration 3: RMSD = 53.5871 px
 Iteration 4: RMSD = 28.272 px
 Iteration 5: RMSD = 28.4193 px
Patch (5, 2): 22 / 25, X range = [767, 1533), Y range = [2968, 3710), Center = (1149, 3338)
 Iteration 1: RMSD = 54.6774 px
 Iteration 2: RMSD = 36.3669 px
 Iteration 3: RMSD = 43.3837 px
 Iteration 4: RMSD = 37.5741 px
 Iteration 5: RMSD = 37.033 px
Patch (5, 3): 23 / 25, X range = [1534, 2300), Y range = [2968, 3710), Center = (1916, 3338)
 Iteration 1: RMSD = 51.1681 px
 Iteration 2: RMSD = 50.5166 px
 Iteration 3: RMSD = 26.3147 px
 Iteration 4: RMSD = 27.2232 px
 Iteration 5: RMSD = 29.9955 px
Patch (5, 4): 24 / 25, X range = [2301, 3067), Y range = [2968, 3710), Center = (2683, 3338)
 Iteration 1: RMSD = 29.8471 px
 Iteration 2: RMSD = 29.2464 px
 Iteration 3: RMSD = 31.052 px
 Iteration 4: RMSD = 29.455 px
 Iteration 5: RMSD = 31.5279 px
Patch (5, 5): 25 / 25, X range = [3068, 3834), Y range = [2968, 3710), Center = (3450, 3338)
 Iteration 1: RMSD = 31.4255 px
 Iteration 2: RMSD = 28.4698 px
 Iteration 3: RMSD = 29.7053 px
 Iteration 4: RMSD = 28.1863 px
 Iteration 5: RMSD = 27.5729 px
Summing frames after dose weighting: ................................................................................ done
Written aligned and dose-weighted sum to MotionCorr/job002/165-36_002.mrc