Working on 139-109_002.tif with 10 thread(s).

Movie size: X = 3838 Y = 3710 N = 80
Frames to be used: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80
Frame grouping: n_frames = 80, requested group size = 1
 | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 | 75 | 76 | 77 | 78 | 79 | 80 | 
interpolate_shifts = 0

In unaligned sum, Mean = 30.5679 Std = 5.88784 Hotpixel threshold = 65.895
Detected 275 hot pixels to be corrected.
Fixed hot pixels.

Global alignment:
 Iteration 1: RMSD = 45.9181 px
 Iteration 2: RMSD = 9.97761 px
 Iteration 3: RMSD = 10.5037 px
 Iteration 4: RMSD = 10.2269 px
 Iteration 5: RMSD = 9.04339 px

Local alignments:
Patches: X = 5 Y = 5
Patch (1, 1): 1 / 25, X range = [0, 766), Y range = [0, 742), Center = (382, 370)
 Iteration 1: RMSD = 60.0583 px
 Iteration 2: RMSD = 35.4665 px
 Iteration 3: RMSD = 36.5498 px
 Iteration 4: RMSD = 33.9041 px
 Iteration 5: RMSD = 31.8955 px
Patch (1, 2): 2 / 25, X range = [767, 1533), Y range = [0, 742), Center = (1149, 370)
 Iteration 1: RMSD = 63.799 px
 Iteration 2: RMSD = 37.4771 px
 Iteration 3: RMSD = 36.3381 px
 Iteration 4: RMSD = 35.7222 px
 Iteration 5: RMSD = 44.3679 px
Patch (1, 3): 3 / 25, X range = [1534, 2300), Y range = [0, 742), Center = (1916, 370)
 Iteration 1: RMSD = 59.3185 px
 Iteration 2: RMSD = 60.8764 px
 Iteration 3: RMSD = 34.9388 px
 Iteration 4: RMSD = 34.2166 px
 Iteration 5: RMSD = 33.9141 px
Patch (1, 4): 4 / 25, X range = [2301, 3067), Y range = [0, 742), Center = (2683, 370)
 Iteration 1: RMSD = 43.0783 px
 Iteration 2: RMSD = 41.1893 px
 Iteration 3: RMSD = 39.3661 px
 Iteration 4: RMSD = 38.1157 px
 Iteration 5: RMSD = 38.497 px
Patch (1, 5): 5 / 25, X range = [3068, 3834), Y range = [0, 742), Center = (3450, 370)
 Iteration 1: RMSD = 38.3109 px
 Iteration 2: RMSD = 39.2528 px
 Iteration 3: RMSD = 38.1553 px
 Iteration 4: RMSD = 17.4461 px
 Iteration 5: RMSD = 17.6476 px
Patch (2, 1): 6 / 25, X range = [0, 766), Y range = [742, 1484), Center = (382, 1112)
 Iteration 1: RMSD = 55.182 px
 Iteration 2: RMSD = 37.8322 px
 Iteration 3: RMSD = 36.2635 px
 Iteration 4: RMSD = 36.4866 px
 Iteration 5: RMSD = 49.4921 px
Patch (2, 2): 7 / 25, X range = [767, 1533), Y range = [742, 1484), Center = (1149, 1112)
 Iteration 1: RMSD = 48.985 px
 Iteration 2: RMSD = 52.8174 px
 Iteration 3: RMSD = 54.9944 px
 Iteration 4: RMSD = 37.2138 px
 Iteration 5: RMSD = 35.71 px
Patch (2, 3): 8 / 25, X range = [1534, 2300), Y range = [742, 1484), Center = (1916, 1112)
 Iteration 1: RMSD = 65.4867 px
 Iteration 2: RMSD = 55.1906 px
 Iteration 3: RMSD = 56.8642 px
 Iteration 4: RMSD = 56.3693 px
 Iteration 5: RMSD = 55.9561 px
Patch (2, 4): 9 / 25, X range = [2301, 3067), Y range = [742, 1484), Center = (2683, 1112)
 Iteration 1: RMSD = 53.0449 px
 Iteration 2: RMSD = 51.8299 px
 Iteration 3: RMSD = 52.5051 px
 Iteration 4: RMSD = 56.1569 px
 Iteration 5: RMSD = 57.4197 px
Patch (2, 5): 10 / 25, X range = [3068, 3834), Y range = [742, 1484), Center = (3450, 1112)
 Iteration 1: RMSD = 41.4949 px
 Iteration 2: RMSD = 45.1436 px
 Iteration 3: RMSD = 48.1061 px
 Iteration 4: RMSD = 47.2836 px
 Iteration 5: RMSD = 46.6311 px
Patch (3, 1): 11 / 25, X range = [0, 766), Y range = [1484, 2226), Center = (382, 1854)
 Iteration 1: RMSD = 62.4892 px
 Iteration 2: RMSD = 65.5826 px
 Iteration 3: RMSD = 49.3943 px
 Iteration 4: RMSD = 47.8758 px
 Iteration 5: RMSD = 48.5911 px
Patch (3, 2): 12 / 25, X range = [767, 1533), Y range = [1484, 2226), Center = (1149, 1854)
 Iteration 1: RMSD = 70.2729 px
 Iteration 2: RMSD = 73.1751 px
 Iteration 3: RMSD = 70.7259 px
 Iteration 4: RMSD = 53.5378 px
 Iteration 5: RMSD = 54.9088 px
Patch (3, 3): 13 / 25, X range = [1534, 2300), Y range = [1484, 2226), Center = (1916, 1854)
 Iteration 1: RMSD = 58.2553 px
 Iteration 2: RMSD = 52.094 px
 Iteration 3: RMSD = 50.3077 px
 Iteration 4: RMSD = 49.7338 px
 Iteration 5: RMSD = 46.6631 px
Patch (3, 4): 14 / 25, X range = [2301, 3067), Y range = [1484, 2226), Center = (2683, 1854)
 Iteration 1: RMSD = 67.6107 px
 Iteration 2: RMSD = 41.3961 px
 Iteration 3: RMSD = 69.443 px
 Iteration 4: RMSD = 73.3067 px
 Iteration 5: RMSD = 70.5328 px
Patch (3, 5): 15 / 25, X range = [3068, 3834), Y range = [1484, 2226), Center = (3450, 1854)
 Iteration 1: RMSD = 27.9943 px
 Iteration 2: RMSD = 22.1624 px
 Iteration 3: RMSD = 22.5188 px
 Iteration 4: RMSD = 22.7408 px
 Iteration 5: RMSD = 18.3549 px
Patch (4, 1): 16 / 25, X range = [0, 766), Y range = [2226, 2968), Center = (382, 2596)
 Iteration 1: RMSD = 65.2192 px
 Iteration 2: RMSD = 64.243 px
 Iteration 3: RMSD = 58.7135 px
 Iteration 4: RMSD = 61.939 px
 Iteration 5: RMSD = 57.6936 px
Patch (4, 2): 17 / 25, X range = [767, 1533), Y range = [2226, 2968), Center = (1149, 2596)
 Iteration 1: RMSD = 67.9791 px
 Iteration 2: RMSD = 70.3564 px
 Iteration 3: RMSD = 70.4286 px
 Iteration 4: RMSD = 59.3703 px
 Iteration 5: RMSD = 78.617 px
Patch (4, 3): 18 / 25, X range = [1534, 2300), Y range = [2226, 2968), Center = (1916, 2596)
 Iteration 1: RMSD = 54.6632 px
 Iteration 2: RMSD = 43.2036 px
 Iteration 3: RMSD = 42.6774 px
 Iteration 4: RMSD = 40.7143 px
 Iteration 5: RMSD = 56.6637 px
Patch (4, 4): 19 / 25, X range = [2301, 3067), Y range = [2226, 2968), Center = (2683, 2596)
 Iteration 1: RMSD = 71.4457 px
 Iteration 2: RMSD = 64.6607 px
 Iteration 3: RMSD = 60.5995 px
 Iteration 4: RMSD = 57.1083 px
 Iteration 5: RMSD = 58.8351 px
Patch (4, 5): 20 / 25, X range = [3068, 3834), Y range = [2226, 2968), Center = (3450, 2596)
 Iteration 1: RMSD = 41.6499 px
 Iteration 2: RMSD = 54.8474 px
 Iteration 3: RMSD = 13.4636 px
 Iteration 4: RMSD = 17.8998 px
 Iteration 5: RMSD = 7.93364 px
Patch (5, 1): 21 / 25, X range = [0, 766), Y range = [2968, 3710), Center = (382, 3338)
 Iteration 1: RMSD = 70.0745 px
 Iteration 2: RMSD = 35.8767 px
 Iteration 3: RMSD = 43.7173 px
 Iteration 4: RMSD = 42.606 px
 Iteration 5: RMSD = 43.5896 px
Patch (5, 2): 22 / 25, X range = [767, 1533), Y range = [2968, 3710), Center = (1149, 3338)
 Iteration 1: RMSD = 58.9174 px
 Iteration 2: RMSD = 49.4259 px
 Iteration 3: RMSD = 49.2638 px
 Iteration 4: RMSD = 49.7379 px
 Iteration 5: RMSD = 52.6468 px
Patch (5, 3): 23 / 25, X range = [1534, 2300), Y range = [2968, 3710), Center = (1916, 3338)
 Iteration 1: RMSD = 72.5975 px
 Iteration 2: RMSD = 115.647 px
 Iteration 3: RMSD = 40.2091 px
 Iteration 4: RMSD = 20.8382 px
 Iteration 5: RMSD = 20.7874 px
Patch (5, 4): 24 / 25, X range = [2301, 3067), Y range = [2968, 3710), Center = (2683, 3338)
 Iteration 1: RMSD = 25.0755 px
 Iteration 2: RMSD = 19.3111 px
 Iteration 3: RMSD = 12.3893 px
 Iteration 4: RMSD = 10.733 px
 Iteration 5: RMSD = 11.0955 px
Patch (5, 5): 25 / 25, X range = [3068, 3834), Y range = [2968, 3710), Center = (3450, 3338)
 Iteration 1: RMSD = 47.8824 px
 Iteration 2: RMSD = 36.4086 px
 Iteration 3: RMSD = 16.407 px
 Iteration 4: RMSD = 0.592848 px
 Iteration 5: RMSD = 0.337357 px

Polynomial fit RMSD: X = 2.09281 px Y = 14.7653 px
The polynomial motion model did not explain the observation very well.
Local correction is disabled for this micrograph.
Summing frames after dose weighting: ................................................................................ done
Written aligned and dose-weighted sum to MotionCorr/job002/139-109_002.mrc