<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-11595" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2023-06-01</depositionDate>
            <releaseDate>2024-03-18</releaseDate>
            <updateDate>2024-03-18</updateDate>
        </keyDates>
        <title>Unseeded Aβ(1-40) amyloid fibrils</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0002-9442-460X</authorORCID>
            <firstName>Matthias</firstName>
            <lastName>Schmidt</lastName>
            <organization type="academic">Institut für Proteinbiochemie, Universität Ulm</organization>
            <street>8/1 Helmholtzstrasse</street>
            <townOrCity>Ulm</townOrCity>
            <stateOrProvince>Baden Württemberg</stateOrProvince>
            <country>Germany</country>
            <postOrZipCode>89081</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0003-2123-6816</authorORCID>
            <firstName>Marcus</firstName>
            <lastName>Fändrich</lastName>
            <organization type="academic">Institut für Proteinbiochemie, Universität Ulm</organization>
            <street>8/1 Helmholtzstrasse</street>
            <townOrCity>Ulm</townOrCity>
            <stateOrProvince>Baden Württemberg</stateOrProvince>
            <country>Germany</country>
            <postOrZipCode>89081</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0009-0004-3946-3579">Pfeiffer PB</author>
            <author authorORCID="0000-0002-9442-460X">Schmidt M</author>
            <author authorORCID="0000-0003-2123-6816">Fändrich M</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>German Research Foundation (DFG)</fundingBody>
                <code>FA 456/24-1</code>
                <country>Germany</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="TB">1.9</datasetSize>
        <entryDOI>10.6019/EMPIAR-11595</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-17166</emdbEntry>
            <emdbEntry>EMD-17167</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="false" preprint="false">
                    <author authorORCID="0009-0004-3946-3579" order="1">Pfeiffer PB</author>
                    <author order="2">Ugrina M</author>
                    <author order="3">Schwierz N</author>
                    <author order="4">Sigurdson CJ</author>
                    <author authorORCID="0000-0002-9442-460X" order="5">Schmidt M</author>
                    <author authorORCID="0000-0003-2123-6816" order="6">Fändrich M</author>
                    <title>Cryo-EM analysis of the effect of seeding with brain-derived Aβ amyloid fibrils</title>
                    <journal></journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country>Germany</country>
                    <language>English</language>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned multi-frame micrographs of unseeded Aβ(1-40) amyloid fibrils</name>
        <directory>/data/movies</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>EER</headerFormat>
        <dataFormat>EER</dataFormat>
        <numImagesOrTiltSeries>4628</numImagesOrTiltSeries>
        <framesPerImage>918</framesPerImage>
        <voxelType>UNSIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>4096</imageWidth>
            <pixelWidth>0.934</pixelWidth>
            <imageHeight>4096</imageHeight>
            <pixelHeight>0.934</pixelHeight>
        </dimensions>
        <details>IC-Krios1 G4 300kV C-FEG
SelectrisX 10eV slit width, Falcon4i
Cs=2.7mm, C2aperture=50um, ObjAperture=100um
EFTEM 130kx, nanoprobe spot 5, beam=630nm

Counting mode, 1pix=0.934 A
~2.9 s exposure, EER files save (918 fractions, not gain corrected)
~40 e/A^2 total dose

defocus range: -0.6 to -2.1

The gain reference (/data/movies/20220808_133943_EER_GainReference.gain) is not applied to the micrographs. The NOTES.txt file contains EM information. Thumbnails (/data/thumbs) as well as coordinates are provided. The coordinates are divided in morphology unseeded i (/data/manual pick unseeded i) and unseeded ii (/data/manual pick unseeded ii).</details>
        <segmentationList/>
        <micrographsFilePattern>data/movies/*.eer</micrographsFilePattern>
        <pickedParticlesFilePattern>data/manual pick unseeded */*.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/manual pick unseeded *</pickedParticlesDirectory>
    </imageSet>
</entry>
