<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-11520" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2023-04-18</depositionDate>
            <releaseDate>2024-11-06</releaseDate>
            <updateDate>2024-11-06</updateDate>
        </keyDates>
        <title>Tilt series of Mycoplasma pneumoniae cells treated with chloramphenicol collected on Gatan K3 camera</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0003-4368-2526</authorORCID>
            <firstName>Liang</firstName>
            <lastName>Xue</lastName>
            <organization type="academic">European Molecular Biology Laboratory(EMBL)</organization>
            <street>Meyerhofstrasse 1</street>
            <townOrCity>Heidelberg</townOrCity>
            <stateOrProvince>Germany (DEU)</stateOrProvince>
            <country>Germany</country>
            <postOrZipCode>69126</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0001-6968-041X</authorORCID>
            <firstName>Julia</firstName>
            <lastName>Mahamid</lastName>
            <organization type="academic">European Molecular Biology Laboratory(EMBL)</organization>
            <street>Meyerhofstrasse 1</street>
            <townOrCity>Heidelberg</townOrCity>
            <stateOrProvince>Germany (DEU)</stateOrProvince>
            <country>Germany</country>
            <postOrZipCode>69126</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0003-4368-2526">Xue L</author>
            <author authorORCID="0000-0002-2939-9487">Spahn CMT</author>
            <author authorORCID="0000-0002-5478-2509">Schacherl M</author>
            <author authorORCID="0000-0001-6968-041X">Mahamid J</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>Chan Zuckerberg Initiative</fundingBody>
                <code>Visual Proteomics</code>
                <country>Germany</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="GB">170.5</datasetSize>
        <entryDOI>10.6019/EMPIAR-11520</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>cell</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-17132</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="false" preprint="true">
                    <author authorORCID="0000-0003-4368-2526" order="1">Xue L</author>
                    <author authorORCID="0000-0002-2939-9487" order="2">Spahn CMT</author>
                    <author authorORCID="0000-0002-5478-2509" order="3">Schacherl M</author>
                    <author authorORCID="0000-0001-6968-041X" order="4">Mahamid J</author>
                    <editor authorORCID="0000-0001-6968-041X" order="1">Mahamid J</editor>
                    <title>Structural evidence of context-dependent action of chloramphenicol in cells</title>
                    <journal></journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country>Germany</country>
                    <year>2023</year>
                    <language>English</language>
                    <details>Dose-symmetric tilt series of intact M. pneumoniae cells treated with chloramphenicol. Gold fiducials were added before plunge freezing. Data were collected on a Titan Krios microscope equipped with Gatan K3 camera (Magnification 64,000x, pixel size 1.329 Å,  tilt range -60°:3°:60°, camera in non-CDS counting mode, 10 frames per tilt image, constant exposure time for each tilt and total dose 137 e/Å2, defocus range from -1 to -3.25μm). Raw frames (movie) for every tilt images of the 139 tilt series were deposited. Gain reference needs flipping along the Y axis in Warp. Detailed information can be found in the provided mdoc files. IMOD/etomo alignment files are also provided (preferentially with motion correction and raw data processing performed in Warp).</details>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned multi-frame micrographs of tilt series of chloramphenicol treated Mycoplasma pneumoniae cells</name>
        <directory>/data/Cm_K3_data/frames</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>139</numImagesOrTiltSeries>
        <framesPerImage>10</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>1.329</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>1.329</pixelHeight>
        </dimensions>
        <details>5808 unaligned multiframe micrographs in LZW compressed TIFF format of 139 tilt series of chloramphenicol treated M. pneumoniae cells. Data collected with a Gatan K3 camera in non-CDS mode, magnification 64k, and 3.34 e-/pixel dose per tilt. Gain reference needs flipping along the Y axis. SerialEM mdoc files and the IMOD/etomo alignment files (preferentially with motion correction and raw data processing performed in Warp) are provided.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
