<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-11450" schemaVersion="0.63" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2023-02-10</depositionDate>
            <releaseDate>2023-07-10</releaseDate>
            <updateDate>2023-07-10</updateDate>
        </keyDates>
        <title>Cryo electron tomography of Cytochalasin D-induced protrusions of Drosophila S2 cells - Datasets 1 - 4</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0002-4406-5151</authorORCID>
            <firstName>Camilla</firstName>
            <lastName>Ventura Santos</lastName>
            <organization type="academic">MRC Laboratory of Molecular Biology</organization>
            <street>Cambridge Biomedical Campus, Francis Crick Ave</street>
            <townOrCity>Cambridge</townOrCity>
            <stateOrProvince>Cambridgeshire</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>CB2 0QH</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0001-7292-5430</authorORCID>
            <firstName>Andrew</firstName>
            <lastName>Carter</lastName>
            <organization type="academic">MRC Laboratory of Molecular Biology</organization>
            <street>Cambridge Biomedical Campus, Francis Crick Ave</street>
            <townOrCity>Cambridge</townOrCity>
            <stateOrProvince>Cambridgeshire</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>CB2 0QH</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-4406-5151">Ventura Santos C</author>
            <author authorORCID="0000-0001-7292-5430">Carter AP</author>
            <author>Rogers SL</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>Medical Research Council (MRC, United Kingdom)</fundingBody>
                <code>MC_UP_A025_1011</code>
                <country>United Kingdom</country>
            </grantReference>
            <grantReference>
                <fundingBody>Welch Foundation</fundingBody>
                <code>210711/Z/18/Z</code>
                <country>United Kingdom</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="GB">446.0</datasetSize>
        <entryDOI>10.6019/EMPIAR-11450</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>cell</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-16685</emdbEntry>
            <emdbEntry>EMD-16693</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="true">
                    <author authorORCID="0000-0002-4406-5151" order="1">Ventura Santos C</author>
                    <author order="2">Rogers SL</author>
                    <author order="3">Carter AP</author>
                    <title>CryoET shows cofilactin filaments inside the microtubule lumen</title>
                    <journal>bioRxiv</journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country></country>
                    <year>2023</year>
                    <externalReferences type="doi">10.1101/2023.03.31.535077</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Dataset 1: Raw multi-frame tilt images of Cytochalasin D induced protrusions of Drosophila S2 cells</name>
        <directory>/data/Dataset1_210428/Raw_Movies</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>25</numImagesOrTiltSeries>
        <framesPerImage>10</framesPerImage>
        <voxelType>UNSIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>3710</imageWidth>
            <pixelWidth>2.952</pixelWidth>
            <imageHeight>3838</imageHeight>
            <pixelHeight>2.952</pixelHeight>
        </dimensions>
        <details>Data from Dataset 1. Raw multi-frame movies of tilt series collected on protrusions of Drosophila S2 cells induced with 2.5 uM Cytochalasin D for 4 hours. The gain reference and defects files are provided within the folder. The pixel size is 2.952 Å/pixel. Data was collected on a K2 summit. Metadata from tilt series acquisition (Mdoc files) is provided inside the Mdoc folder.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Dataset 1: Binned, deconvolved tomograms of induced Drosophila S2 cell protrusions</name>
        <directory>/data/Dataset1_210428/bin4_deconvoled_tomograms</directory>
        <category>reconstructed volumes</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>25</numImagesOrTiltSeries>
        <framesPerImage>10</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>1124</imageWidth>
            <pixelWidth>11.808</pixelWidth>
            <imageHeight>1124</imageHeight>
            <pixelHeight>11.808</pixelHeight>
        </dimensions>
        <details>Dataset 1: Tomograms binned by 4 (11.808 Å/pixel), reconstructed and deconvolved in WARP.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Dataset 2: Raw multi-frame tilt images of Cytochalasin D induced protrusions of Drosophila S2 cells</name>
        <directory>/data/Dataset2_210605DY2/raw_movies</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>17</numImagesOrTiltSeries>
        <framesPerImage>10</framesPerImage>
        <voxelType>UNSIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>3710</imageWidth>
            <pixelWidth>2.952</pixelWidth>
            <imageHeight>3838</imageHeight>
            <pixelHeight>2.952</pixelHeight>
        </dimensions>
        <details>Data from Dataset 2. Raw multi-frame movies of tilt series collected on protrusions of Drosophila S2 cells induced with 2.5 uM Cytochalasin D for 4 hours. The gain reference and defects files are provided within the folder. The pixel size is 2.952 Å/pixel. Data was collected on a K2 summit.  Metadata from tilt series acquisition (Mdoc files) is provided inside the Mdoc folder.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Dataset 2: Binned, deconvolved tomograms of induced Drosophila S2 cell protrusions</name>
        <directory>/data/Dataset2_210605DY2/bin4_deconvolved_tomograms</directory>
        <category>reconstructed volumes</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>17</numImagesOrTiltSeries>
        <framesPerImage>10</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>960</imageWidth>
            <pixelWidth>11.808</pixelWidth>
            <imageHeight>928</imageHeight>
            <pixelHeight>11.808</pixelHeight>
        </dimensions>
        <details>Dataset 2: Tomograms binned by 4 (11.808 Å/pixel), reconstructed and deconvolved in WARP.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Dataset 3: Raw multi-frame tilt images of Cytochalasin D induced protrusions of Drosophila S2 cells</name>
        <directory>/data/Dataset3_210725_DZ1/Raw_movies</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>39</numImagesOrTiltSeries>
        <framesPerImage>14</framesPerImage>
        <voxelType>UNSIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>3710</imageWidth>
            <pixelWidth>2.952</pixelWidth>
            <imageHeight>3838</imageHeight>
            <pixelHeight>2.952</pixelHeight>
        </dimensions>
        <details>Data from Dataset 3. Raw multi-frame movies of tilt series collected on protrusions of Drosophila S2 cells induced with 2.5 uM Cytochalasin D for 4 hours. The gain reference and defects files are provided within the folder. The pixel size is 2.952 Å/pixel. Data was collected on a K2 summit.  Metadata from tilt series acquisition (Mdoc files) is provided inside the Mdoc folder.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Dataset 3: Binned, deconvolved tomograms of induced Drosophila S2 cell protrusions</name>
        <directory>/data/Dataset3_210725_DZ1/bin4_deconvolved_tomograms</directory>
        <category>reconstructed volumes</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>39</numImagesOrTiltSeries>
        <framesPerImage>14</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>960</imageWidth>
            <pixelWidth>11.808</pixelWidth>
            <imageHeight>928</imageHeight>
            <pixelHeight>11.808</pixelHeight>
        </dimensions>
        <details>Dataset 3: Tomograms binned by 4 (11.808 Å/pixel), reconstructed and deconvolved in WARP.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Dataset 4: Raw multi-frame tilt images of Cytochalasin D induced protrusions of Drosophila S2 cells</name>
        <directory>/data/Dataset4_210724FB34/raw_movies</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>22</numImagesOrTiltSeries>
        <framesPerImage>14</framesPerImage>
        <voxelType>UNSIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>3710</imageWidth>
            <pixelWidth>2.952</pixelWidth>
            <imageHeight>3838</imageHeight>
            <pixelHeight>2.952</pixelHeight>
        </dimensions>
        <details>Data from Dataset 4. Raw multi-frame movies of tilt series collected on protrusions of Drosophila S2 cells induced with 5 uM Cytochalasin D for 4 hours. The gain reference and defects files are provided within the folder. The pixel size is 2.952 Å/pixel. Data was collected on a K2 summit.  Metadata from tilt series acquisition (Mdoc files) is provided inside the Mdoc folder.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Dataset 4: Binned, deconvolved tomograms of induced Drosophila S2 cell protrusions</name>
        <directory>/data/Dataset4_210724FB34/bin4_deconvolved_tomograms</directory>
        <category>reconstructed volumes</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>22</numImagesOrTiltSeries>
        <framesPerImage>14</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>960</imageWidth>
            <pixelWidth>11.808</pixelWidth>
            <imageHeight>928</imageHeight>
            <pixelHeight>11.808</pixelHeight>
        </dimensions>
        <details>Dataset 4: Tomograms binned by 4 (11.808 Å/pixel), reconstructed and deconvolved in WARP.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
