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    <admin>
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        <keyDates>
            <depositionDate>2023-01-26</depositionDate>
            <releaseDate>2023-01-30</releaseDate>
            <updateDate>2023-01-30</updateDate>
        </keyDates>
        <title>3D-surface reconstruction of cellular cryo-soft X-ray microscopy tomograms using semi-supervised deep learning</title>
        <correspondingAuthor>
            <authorORCID>0000-0003-3948-4332</authorORCID>
            <firstName>Helge</firstName>
            <lastName>Ewers</lastName>
            <organization type="academic">Department of Biology, Chemistry, Pharmacy; Institute of Biochemistry; Free University Berlin</organization>
            <street>Thielallee 63</street>
            <townOrCity>Berlin</townOrCity>
            <stateOrProvince>Berlin</stateOrProvince>
            <country>Germany</country>
            <postOrZipCode>14195</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator>
            <authorORCID>0000-0003-3948-4332</authorORCID>
            <firstName>Helge</firstName>
            <lastName>Ewers</lastName>
            <organization type="academic">Department of Biology, Chemistry, Pharmacy; Institute of Biochemistry; Free University Berlin</organization>
            <street>Thielallee 63</street>
            <townOrCity>Berlin</townOrCity>
            <stateOrProvince>Berlin</stateOrProvince>
            <country>Germany</country>
            <postOrZipCode>14195</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-5850-7387">Dyhr MCA</author>
            <author authorORCID="0000-0002-7698-5630">Sadeghi M</author>
            <author>Moynova R</author>
            <author>Knappe C</author>
            <author authorORCID="0000-0002-4668-6736">Kepsutlu Çakmak B</author>
            <author>Werner S</author>
            <author authorORCID="0000-0001-9448-0524">Schneider G</author>
            <author authorORCID="0000-0002-9032-1988">McNally J</author>
            <author authorORCID="0000-0003-4169-9324">Noe F</author>
            <author authorORCID="0000-0003-3948-4332">Ewers H</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>German Research Foundation (DFG)</fundingBody>
                <code>SFB 958/Project A04</code>
                <country>Germany</country>
            </grantReference>
            <grantReference>
                <fundingBody>German Research Foundation (DFG)</fundingBody>
                <code>SFB 1114/Project C03</code>
                <country>Germany</country>
            </grantReference>
            <grantReference>
                <fundingBody>European Research Council (ERC)</fundingBody>
                <code>CoG 772230 “ScaleCell”</code>
                <country>Germany</country>
            </grantReference>
            <grantReference>
                <fundingBody>German Research Foundation (DFG)</fundingBody>
                <code>278001972 – TRR 186</code>
                <country>Germany</country>
            </grantReference>
            <grantReference>
                <fundingBody>German Federal Ministry for Education and Research</fundingBody>
                <code>CLS9 COMPXRAY</code>
                <country>Germany</country>
            </grantReference>
        </grantSupport>
        <datasetSize>23.5</datasetSize>
        <entryDOI>10.6019/EMPIAR-11392</entryDOI>
        <experimentType>SXT</experimentType>
        <scale>cell</scale>
    </admin>
    <crossReferences>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="true">
                    <author authorORCID="0000-0002-5850-7387" order="1">Dyhr MCA</author>
                    <author authorORCID="0000-0002-7698-5630" order="2">Sadeghi M</author>
                    <author order="3">Moynova R</author>
                    <author order="4">Knappe C</author>
                    <author authorORCID="0000-0002-4668-6736" order="5">Kepsutlu Çakmak B</author>
                    <author order="6">Werner S</author>
                    <author authorORCID="0000-0001-9448-0524" order="7">Schneider G</author>
                    <author authorORCID="0000-0002-9032-1988" order="8">McNally J</author>
                    <author authorORCID="0000-0003-4169-9324" order="9">Noe F</author>
                    <author authorORCID="0000-0003-3948-4332" order="10">Ewers H</author>
                    <title>3D-surface reconstruction of cellular cryo-soft X-ray microscopy tomograms using semi-supervised deep learning</title>
                    <journal>bioRxiv</journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country></country>
                    <year>2022</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1101/2022.05.16.492055</externalReferences>
                    <details>Representative tomograms from the publication "3D-surface reconstruction of cellular cryo-soft X-ray microscopy tomograms using semi-supervised deep learning". Deposited are raw image stacks, acquisition logs and tomographic reconstructions for datasets used in network evaluation and analysis.</details>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Tomographic reconstruction of plunge-frozen CRFK cell</name>
        <directory>/data</directory>
        <category>reconstructed volumes</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>7</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>1284</imageWidth>
            <pixelWidth>9.8</pixelWidth>
            <imageHeight>1324</imageHeight>
            <pixelHeight>9.8</pixelHeight>
        </dimensions>
        <details>Representative datasets from the manuscript "3D-surface reconstruction of cellular cryo-soft X-ray microscopy tomograms using semi-supervised deep learning", https://doi.org/10.1101/2022.05.16.492055 
Included are tomographic reconstructions of plunge-frozen CRFK cells, as well as corresponding raw tilt series and log files.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
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