<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-11362" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2022-12-06</depositionDate>
            <releaseDate>2023-04-11</releaseDate>
            <updateDate>2023-04-11</updateDate>
        </keyDates>
        <title>Sarecycline inhibits protein translation in Cutibacterium acnes 70S ribosome using a two-site mechanism</title>
        <correspondingAuthor>
            <authorORCID>0000-0002-4011-8308</authorORCID>
            <firstName>Christopher</firstName>
            <middleName>G</middleName>
            <lastName>Bunick</lastName>
            <organization type="academic">Department of Dermatalogy, Yale School of Medicine</organization>
            <street>266 Whitney Avenue</street>
            <townOrCity>New Haven</townOrCity>
            <stateOrProvince>Connecticut</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>06511</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator>
            <authorORCID>0000-0002-4011-8308</authorORCID>
            <firstName>Christopher</firstName>
            <lastName>Bunick</lastName>
            <organization type="academic">Department of Dermatology, Yale School of Medicine</organization>
            <street>266 Whitney Avenue</street>
            <townOrCity>New Haven</townOrCity>
            <stateOrProvince>Connecticut</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>06511</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0001-6528-5068">Lomakin IB</author>
            <author authorORCID="0000-0002-9271-243X">Devarkar SC</author>
            <author authorORCID="0000-0003-2480-7274">Patel S</author>
            <author authorORCID="0000-0002-5321-0584">Grada A</author>
            <author authorORCID="0000-0002-4011-8308">Bunick CG</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody></fundingBody>
                <code></code>
                <country></country>
            </grantReference>
        </grantSupport>
        <datasetSize units="TB">6.2</datasetSize>
        <entryDOI>10.6019/EMPIAR-11362</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-26959</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0001-6528-5068" order="1">Lomakin IB</author>
                    <author authorORCID="0000-0002-9271-243X" order="2">Devarkar SC</author>
                    <author authorORCID="0000-0003-2480-7274" order="3">Patel S</author>
                    <author authorORCID="0000-0002-5321-0584" order="4">Grada A</author>
                    <author authorORCID="0000-0002-4011-8308" order="5">Bunick CG</author>
                    <title>Sarecycline inhibits protein translation in Cutibacterium acnes 70S ribosome using a two-site mechanism</title>
                    <journal>Nucleic acids research</journal>
                    <journalAbbreviation>Nucleic Acids Res</journalAbbreviation>
                    <country></country>
                    <year>2023</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1093/nar/gkad103</externalReferences>
                    <externalReferences type="pubmed">36864821</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Raw multiframe micrographs for Sarecycline bound 70S Ribosome from C. acnes</name>
        <directory>/data/rawTIF Movies</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>10765</numImagesOrTiltSeries>
        <framesPerImage>35</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>11520</imageWidth>
            <pixelWidth>0.534</pixelWidth>
            <imageHeight>8184</imageHeight>
            <pixelHeight>0.534</pixelHeight>
        </dimensions>
        <details></details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Extracted particle stack based on Template picking from cryoSPARC</name>
        <directory>/data/ParticleStack</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>1108852</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>340</imageWidth>
            <pixelWidth>1.068</pixelWidth>
            <imageHeight>340</imageHeight>
            <pixelHeight>1.068</pixelHeight>
        </dimensions>
        <details>A stack of 1108852 particles picked from 10,765 motion-corrected micrographs</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Dose-Weighted Motion Corrected Micrographs for Sarecycline bound 70S Ribosome from C. acnes</name>
        <directory>/data/MotionCorrected_Micrographs</directory>
        <category>micrographs - single frame</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>10765</numImagesOrTiltSeries>
        <framesPerImage>35</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>1.068</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>1.068</pixelHeight>
        </dimensions>
        <details>Dose-weighted motion corrected micrographs using Patch motion correction in cryoSPARC</details>
        <segmentationList/>
        <micrographsFilePattern>data/MotionCorrected_Micrographs/*_slot12_*_patch_aligned_doseweighted.mrc</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Non-Dose-Weighted Motion Corrected Micrographs for Sarecycline bound 70S Ribosome from C. acnes</name>
        <directory>/data/MotionCorrected_Micrographs/Non-Doseweighted</directory>
        <category>micrographs - single frame</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>10765</numImagesOrTiltSeries>
        <framesPerImage>35</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>1.068</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>1.068</pixelHeight>
        </dimensions>
        <details>Non-dose-weighted motion corrected micrographs using Patch motion correction in cryoSPARC</details>
        <segmentationList/>
        <micrographsFilePattern>data/MotionCorrected_Micrographs/Non-Doseweighted/*_slot12_*_patch_aligned.mrc</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
