<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-11133" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2022-06-30</depositionDate>
            <releaseDate>2022-09-12</releaseDate>
            <updateDate>2022-09-12</updateDate>
        </keyDates>
        <title>Structures of the Cyanobacterial Phycobilisome in the Light-harvesting and Photoprotected States</title>
        <correspondingAuthor>
            <authorORCID>0000-0001-7204-5863</authorORCID>
            <firstName>Paul</firstName>
            <middleName>Victor</middleName>
            <lastName>Sauer</lastName>
            <organization type="academic">QB3 Institute, University of California, Berkeley, CA, USA</organization>
            <street>742 Stanley Hall</street>
            <townOrCity>Berkeley</townOrCity>
            <stateOrProvince>CA</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>94720</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator>
            <authorORCID>0000-0002-9977-8482</authorORCID>
            <firstName>Cheryl</firstName>
            <middleName>A</middleName>
            <lastName>Kerfeld</lastName>
            <organization type="academic">MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA</organization>
            <townOrCity>East Lansing</townOrCity>
            <stateOrProvince>MI</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>48824</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0001-7204-5863">Sauer PV</author>
            <author authorORCID="0000-0002-3500-2052">Dominguez-Martin MA</author>
            <author authorORCID="0000-0002-9977-8482">Kerfeld CA</author>
        </authorsList>
        <datasetSize units="TB">16.7</datasetSize>
        <entryDOI>10.6019/EMPIAR-11133</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-25029</emdbEntry>
            <emdbEntry>EMD-25028</emdbEntry>
            <emdbEntry>EMD-25069</emdbEntry>
            <emdbEntry>EMD-25070</emdbEntry>
            <emdbEntry>EMD-25071</emdbEntry>
            <emdbEntry>EMD-25030</emdbEntry>
            <emdbEntry>EMD-25031</emdbEntry>
            <emdbEntry>EMD-25032</emdbEntry>
            <emdbEntry>EMD-25033</emdbEntry>
            <emdbEntry>EMD-25068</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0002-3500-2052" order="1">Domínguez-Martín MA</author>
                    <author authorORCID="0000-0001-7204-5863" order="2">Sauer PV</author>
                    <author authorORCID="0000-0002-6982-4345" order="3">Kirst H</author>
                    <author authorORCID="0000-0001-6290-4820" order="4">Sutter M</author>
                    <author authorORCID="0000-0002-9259-4218" order="5">Bína D</author>
                    <author authorORCID="0000-0001-9379-7159" order="6">Greber BJ</author>
                    <author authorORCID="0000-0001-9816-3681" order="7">Nogales E</author>
                    <author authorORCID="0000-0002-6176-0420" order="8">Polívka T</author>
                    <author authorORCID="0000-0002-9977-8482" order="9">Kerfeld CA</author>
                    <title>Structures of a phycobilisome in light-harvesting and photoprotected states</title>
                    <journal>Nature</journal>
                    <journalAbbreviation>Nature</journalAbbreviation>
                    <country></country>
                    <year>2022</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1038/s41586-022-05156-4</externalReferences>
                    <externalReferences type="pubmed">36045294</externalReferences>
                    <details>Datasets 1(PBS-apo), 2 (PBS-apo) and 3 (OCP-PBS) from the paper; This entry contains the motion-corrected and lattice-subtracted micrographs and the raw movie files. This entry also contains Cryosparc particle files and passthrough files (.cs format) for each reconstruction from datasets 2 and 3.</details>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Dataset 3: PBS-OCP micrographs motion corrected and streptavidin subtracted</name>
        <directory>/data/Frames_sub_correctdose</directory>
        <category>micrographs - single frame</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>13427</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>1.05</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>1.05</pixelHeight>
        </dimensions>
        <details>Data collected on 300kV Krios G3 with K3 detector. Micrographs are averaged from 50 frame movies with a total dose of 50e/A2. After motion correction in Relion3.1, streptavidin lattice signal was subtracted using custom Matlab scripts.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Dataset 2: PBS-apo micrographs motion corrected and streptavidin subtracted</name>
        <directory>/data/Frames_sub_20Dec21</directory>
        <category>micrographs - single frame</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>12051</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>1.05</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>1.05</pixelHeight>
        </dimensions>
        <details>Data collected on 300kV Krios G3 with K3 detector. Micrographs are averaged from 50 frame movies with a total dose of 50e/A2. After motion correction in Relion3.1, streptavidin lattice signal was subtracted using custom Matlab scripts.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Dataset 1: PBS-apo micrographs motion corrected and streptavidin subtracted</name>
        <directory>/data/Frames_grid3_sub</directory>
        <category>micrographs - single frame</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>1954</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>1.115</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>1.115</pixelHeight>
        </dimensions>
        <details>Data collected on 200kV Arctica with K3 detector. Micrographs are averaged from 50 frame movies with a total dose of 50e/A2. After motion correction in Relion3.1, streptavidin lattice signal was subtracted using custom Matlab scripts.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Dataset 3: PBS-OCP raw movies unaligned and unsubtracted</name>
        <directory>/data/Frames_dataset1</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>13452</numImagesOrTiltSeries>
        <framesPerImage>50</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>11520</imageWidth>
            <pixelWidth>0.524</pixelWidth>
            <imageHeight>8184</imageHeight>
            <pixelHeight>0.524</pixelHeight>
        </dimensions>
        <details>Data collected on 300kV Krios G3 with K3 detector. Total dose of 50e/A2. Contains streptavidin signal. Gain reference in .dm4 format.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Dataset 2: PBS-apo raw movies unaligned and unsubtracted</name>
        <directory>/data/Frames_dataset2</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>12387</numImagesOrTiltSeries>
        <framesPerImage>50</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>11520</imageWidth>
            <pixelWidth>0.524</pixelWidth>
            <imageHeight>8184</imageHeight>
            <pixelHeight>0.524</pixelHeight>
        </dimensions>
        <details>Data collected on 300kV Krios G3 with K3 detector. Total dose of 50e/A2. Contains streptavidin signal. Gain reference in .dm4 format.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
