<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-11128" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2022-07-25</depositionDate>
            <releaseDate>2022-09-13</releaseDate>
            <updateDate>2022-11-11</updateDate>
        </keyDates>
        <title>Cryo-EM of ADP-F-actin</title>
        <correspondingAuthor>
            <authorORCID>0000-0001-7250-4484</authorORCID>
            <firstName>Gregory</firstName>
            <middleName>M.</middleName>
            <lastName>Alushin</lastName>
            <organization type="academic">Laboratory of Structural Biophysics and Mechanobiology, The Rockefeller University</organization>
            <townOrCity>New York</townOrCity>
            <stateOrProvince>NY</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>10065</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator>
            <authorORCID>0000-0001-7250-4484</authorORCID>
            <firstName>Gregory</firstName>
            <middleName>M.</middleName>
            <lastName>Alushin</lastName>
            <organization type="academic">Laboratory of Structural Biophysics and Mechanobiology, The Rockefeller University</organization>
            <townOrCity>New York</townOrCity>
            <stateOrProvince>NY</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>10065</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-2501-9280">Reynolds MJ</author>
            <author>Hachicho C</author>
            <author>Carl AG</author>
            <author authorORCID="0000-0001-7270-2974">Gong R</author>
            <author authorORCID="0000-0001-7250-4484">Alushin GM</author>
        </authorsList>
        <datasetSize>938.5</datasetSize>
        <entryDOI>10.6019/EMPIAR-11128</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-27114</emdbEntry>
            <emdbEntry>EMD-27116</emdbEntry>
            <emdbEntry>EMD-27118</emdbEntry>
            <emdbEntry>EMD-27119</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0002-2501-9280" order="1">Reynolds MJ</author>
                    <author order="2">Hachicho C</author>
                    <author order="3">Carl AG</author>
                    <author authorORCID="0000-0001-7270-2974" order="4">Gong R</author>
                    <author authorORCID="0000-0001-7250-4484" order="5">Alushin GM</author>
                    <title>Bending forces and nucleotide state jointly regulate F-actin structure</title>
                    <journal>Nature</journal>
                    <journalAbbreviation>Nature</journalAbbreviation>
                    <country></country>
                    <issue>7935</issue>
                    <volume>611</volume>
                    <firstPage>380</firstPage>
                    <lastPage>386</lastPage>
                    <year>2022</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1038/s41586-022-05366-w</externalReferences>
                    <externalReferences type="pubmed">36289330</externalReferences>
                    <details>This dataset was used to generate reconstructions of helically-symmetric ADP-F-actin, bent ADP-F-actin, and straight asymmetrically reconstructed ADP-F-actin.</details>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned multi-frame micrographs of ADP-F-actin</name>
        <directory>/data/raw_micrographs</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>1548</numImagesOrTiltSeries>
        <framesPerImage>40</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>7420</imageWidth>
            <pixelWidth>0.515</pixelWidth>
            <imageHeight>7676</imageHeight>
            <pixelHeight>0.515</pixelHeight>
        </dimensions>
        <details>This directory also contains motion-correction that was done on-the-fly. Re-running motion-correction locally is recommended.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Polished single-frame particles of bent ADP-F-actin segments</name>
        <directory>/data/ADP_asymmetric_particle_stacks/bent</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRCS</headerFormat>
        <dataFormat>MRCS</dataFormat>
        <numImagesOrTiltSeries>10753</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>512</imageWidth>
            <pixelWidth>1.03</pixelWidth>
            <imageHeight>512</imageHeight>
            <pixelHeight>1.03</pixelHeight>
        </dimensions>
        <details>This stack of particles was generated from the final Refine3D of the asymmetric, bent ADP-F-actin at EMD-27116 and PDB: 8D15 using the relion_stack_create command.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Polished single-frame particles of straight ADP-F-actin segments, Subset 1</name>
        <directory>/data/ADP_asymmetric_particle_stacks/str1</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRCS</headerFormat>
        <dataFormat>MRCS</dataFormat>
        <numImagesOrTiltSeries>7833</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>512</imageWidth>
            <pixelWidth>1.03</pixelWidth>
            <imageHeight>512</imageHeight>
            <pixelHeight>1.03</pixelHeight>
        </dimensions>
        <details>This stack of particles was generated from the final Refine3D of the asymmetric, straight ADP-F-actin at EMD-27118 and PDB: 8D17 using the relion_stack_create command.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Polished single-frame particles of straight ADP-F-actin segments, Subset 2</name>
        <directory>/data/ADP_asymmetric_particle_stacks/str2</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRCS</headerFormat>
        <dataFormat>MRCS</dataFormat>
        <numImagesOrTiltSeries>7833</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>512</imageWidth>
            <pixelWidth>1.03</pixelWidth>
            <imageHeight>512</imageHeight>
            <pixelHeight>1.03</pixelHeight>
        </dimensions>
        <details>This stack of particles was generated from the final Refine3D of the asymmetric, straight ADP-F-actin at EMD-27119 and PDB: 8D18 using the relion_stack_create command.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Polished single-frame particles of helical ADP-F-actin segments, for high-resolution</name>
        <directory>/data/helical_polished_stack</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRCS</headerFormat>
        <dataFormat>MRCS</dataFormat>
        <numImagesOrTiltSeries>219569</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>512</imageWidth>
            <pixelWidth>1.03</pixelWidth>
            <imageHeight>512</imageHeight>
            <pixelHeight>1.03</pixelHeight>
        </dimensions>
        <details>This set of particles was used for the final Refine3D of the helically-symmetric ADP-F-actin at EMD-27114 and PDB: 8D13
The run_data.star file corresponds to the final Refine3D that was run using the polished particle stacks in the Polish directory.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
