<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-11070" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2022-06-15</depositionDate>
            <releaseDate>2022-11-11</releaseDate>
            <updateDate>2022-11-11</updateDate>
        </keyDates>
        <title>Tilt series of SARS-CoV-2 virions, Wuhan/Alpha/Beta/Delta variants</title>
        <correspondingAuthor>
            <authorORCID>0000-0002-5716-0270</authorORCID>
            <firstName>Thomas</firstName>
            <lastName>Calcraft</lastName>
            <organization type="academic">The Francis Crick Institute</organization>
            <street>1 Midland Road</street>
            <townOrCity>London</townOrCity>
            <country>United Kingdom</country>
            <postOrZipCode>NW1 1AT</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator>
            <authorORCID>0000-0002-0387-2862</authorORCID>
            <firstName>Peter</firstName>
            <lastName>Rosenthal</lastName>
            <organization type="academic">The Francis Crick Institute</organization>
            <street>1 Midland Road</street>
            <townOrCity>London</townOrCity>
            <country>United Kingdom</country>
            <postOrZipCode>NW1 1AT</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author>Calder LJ</author>
            <author>Calcraft T</author>
            <author>Hussain S</author>
            <author>Harvey R</author>
            <author>Rosenthal PB</author>
        </authorsList>
        <datasetSize>120.5</datasetSize>
        <entryDOI>10.6019/EMPIAR-11070</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-15182</emdbEntry>
            <emdbEntry>EMD-15183</emdbEntry>
            <emdbEntry>EMD-15181</emdbEntry>
            <emdbEntry>EMD-15185</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author order="1">Calder LJ</author>
                    <author order="2">Calcraft T</author>
                    <author order="3">Hussain S</author>
                    <author order="4">Harvey R</author>
                    <author order="5">Rosenthal PB</author>
                    <title>Electron cryotomography of SARS-CoV-2 virions reveals cylinder-shaped particles with a double layer RNP assembly</title>
                    <journal>Communications Biology</journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country></country>
                    <volume>5</volume>
                    <year>2022</year>
                    <externalReferences type="doi">10.1038/s42003-022-04183-1</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned tilt movies of SARS-CoV-2 virions (Wuhan strain)</name>
        <directory>/data/TiltSeries/Wuhan_Movies</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>533</numImagesOrTiltSeries>
        <framesPerImage>4</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>3838</imageWidth>
            <pixelWidth>2.22</pixelWidth>
            <imageHeight>3710</imageHeight>
            <pixelHeight>2.22</pixelHeight>
        </dimensions>
        <details>Movies have 4 frames each, corresponding to 2.38e-/A^2 per tilt. Tilt series collected +/-60deg in dose symmetric sequence, grouping 2 (0,+3,-3,-6,+6,+9,etc...). Tilt axis rotation angle is 177deg.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Tilt series of SARS-CoV-2 virions (Alpha variant B.1.1.7)</name>
        <directory>/data/TiltSeries/Kent_B117</directory>
        <category>tilt series</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>2</numImagesOrTiltSeries>
        <framesPerImage>39</framesPerImage>
        <voxelType>UNSIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>4096</imageWidth>
            <pixelWidth>2.58</pixelWidth>
            <imageHeight>4096</imageHeight>
            <pixelHeight>2.58</pixelHeight>
        </dimensions>
        <details>2.5e-/A^2 dose per tilt. Tilt series collected +/-57deg in dose symmetric sequence, grouping 2 (0,+3,-3,-6,+6,+9,etc...). Tilt axis rotation angle is -2deg.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Tilt series of SARS-CoV-2 virions (Beta variant B.1.351)</name>
        <directory>/data/TiltSeries/SA_B1351</directory>
        <category>tilt series</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>2</numImagesOrTiltSeries>
        <framesPerImage>39</framesPerImage>
        <voxelType>UNSIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>4096</imageWidth>
            <pixelWidth>2.58</pixelWidth>
            <imageHeight>4096</imageHeight>
            <pixelHeight>2.58</pixelHeight>
        </dimensions>
        <details>2.5e-/A^2 dose per tilt. Tilt series collected +/-57deg in dose symmetric sequence, grouping 2 (0,+3,-3,-6,+6,+9,etc...). Tilt axis rotation angle is -2deg.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Tilt series of SARS-CoV-2 virions (Delta variant B.1.617)</name>
        <directory>/data/TiltSeries/India_B1617</directory>
        <category>tilt series</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>2</numImagesOrTiltSeries>
        <framesPerImage>41</framesPerImage>
        <voxelType>UNSIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>4096</imageWidth>
            <pixelWidth>2.58</pixelWidth>
            <imageHeight>4096</imageHeight>
            <pixelHeight>2.58</pixelHeight>
        </dimensions>
        <details>2.0e-/A^2 dose per tilt. Tilt series collected +/-60deg in dose symmetric sequence, grouping 2 (0,+3,-3,-6,+6,+9,etc...). Tilt axis rotation angle is -2deg.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
