<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-10907" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2021-12-17</depositionDate>
            <releaseDate>2022-01-12</releaseDate>
            <updateDate>2022-10-17</updateDate>
        </keyDates>
        <title>FIB-SEM of an Mbp-deficient shiverer mouse optic nerve</title>
        <correspondingAuthor>
            <authorORCID>0000-0002-2902-7165</authorORCID>
            <firstName>Wiebke</firstName>
            <lastName>Möbius</lastName>
            <organization type="academic">Electron Microscopy Core Unit, Max Planck Institute of Experimental Medicine</organization>
            <street>Hermann-Rein-Straße 3</street>
            <townOrCity>Göttingen</townOrCity>
            <stateOrProvince>Lower Saxony</stateOrProvince>
            <country>Germany</country>
            <postOrZipCode>D-37075</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator>
            <authorORCID>0000-0002-2902-7165</authorORCID>
            <firstName>Wiebke</firstName>
            <lastName>Möbius</lastName>
            <organization type="academic">Electron Microscopy Core Unit, Max Planck Institute of Experimental Medicine</organization>
            <street>Hermann-Rein-Straße 3</street>
            <townOrCity>Göttingen</townOrCity>
            <stateOrProvince>Lower Saxony</stateOrProvince>
            <country>Germany</country>
            <postOrZipCode>D-37075</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author>Meschkat M</author>
            <author authorORCID="0000-0002-4814-7517">Steyer AM</author>
            <author authorORCID="0000-0002-9535-9395">Ruhwedel T</author>
            <author authorORCID="0000-0002-2902-7165">Möbius W</author>
        </authorsList>
        <datasetSize>18.8</datasetSize>
        <entryDOI>10.6019/EMPIAR-10907</entryDOI>
        <experimentType>FIB-SEM</experimentType>
        <scale>tissue</scale>
    </admin>
    <crossReferences>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author order="1">Meschkat M</author>
                    <author authorORCID="0000-0002-4814-7517" order="2">Steyer AM</author>
                    <author order="3">Weil MT</author>
                    <author authorORCID="0000-0002-5079-502X" order="4">Kusch K</author>
                    <author order="5">Jahn O</author>
                    <author order="6">Piepkorn L</author>
                    <author authorORCID="0000-0002-2313-1439" order="7">Agüi-Gonzalez P</author>
                    <author order="8">Phan NTN</author>
                    <author authorORCID="0000-0002-9535-9395" order="9">Ruhwedel T</author>
                    <author order="10">Sadowski B</author>
                    <author authorORCID="0000-0002-1667-7839" order="11">Rizzoli SO</author>
                    <author authorORCID="0000-0002-7710-5738" order="12">Werner HB</author>
                    <author authorORCID="0000-0001-8371-5711" order="13">Ehrenreich H</author>
                    <author authorORCID="0000-0001-8724-9666" order="14">Nave KA</author>
                    <author authorORCID="0000-0002-2902-7165" order="15">Möbius W</author>
                    <title>White matter integrity in mice requires continuous myelin synthesis at the inner tongue</title>
                    <journal>Nature communications</journal>
                    <journalAbbreviation>Nat Commun</journalAbbreviation>
                    <country></country>
                    <issue>1</issue>
                    <volume>13</volume>
                    <year>2022</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1038/s41467-022-28720-y</externalReferences>
                    <externalReferences type="pubmed">35246535</externalReferences>
                    <details>The micrographs are obtained by FIB-SEM (Zeiss Crossbeam 540): SEM: 1.5 kV,  ESB grid 450V, pixel size x/y 5 nm, continuous mill-and-acquire mode; FIB: 3 nA , z-step 50 nm. Postprocessing: alignment with Fiji/ImageJ TrackEM2, cropped, inverted and blurred (Gaussian blur, sigma 2) with Fiji/ImageJ</details>
                </journalCitation>
            </universalCitation>
            <universalCitation>
                <journalCitation published="true" preprint="true">
                    <author order="1">Meschkat M</author>
                    <author authorORCID="0000-0002-4814-7517" order="2">Steyer AM</author>
                    <author order="3">Weil M</author>
                    <author authorORCID="0000-0002-5079-502X" order="4">Kusch K</author>
                    <author authorORCID="0000-0002-3397-8924" order="5">Jahn O</author>
                    <author order="6">Piepkorn L</author>
                    <author authorORCID="0000-0002-2313-1439" order="7">Agüi-Gonzalez P</author>
                    <author order="8">Ngoc Phan NT</author>
                    <author authorORCID="0000-0002-9535-9395" order="9">Ruhwedel T</author>
                    <author order="10">Sadowski B</author>
                    <author authorORCID="0000-0002-1667-7839" order="11">Rizzoli SO</author>
                    <author authorORCID="0000-0002-7710-5738" order="12">Werner HB</author>
                    <author authorORCID="0000-0001-8371-5711" order="13">Ehrenreich H</author>
                    <author authorORCID="0000-0001-8724-9666" order="14">Nave K</author>
                    <author authorORCID="0000-0002-2902-7165" order="15">Möbius W</author>
                    <title>White matter integrity requires continuous myelin synthesis at the inner tongue</title>
                    <journal>bioRxiv</journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country></country>
                    <year>2020</year>
                    <externalReferences type="doi">10.1101/2020.09.02.279612</externalReferences>
                    <details>The micrographs are obtained by FIB-SEM (Zeiss Crossbeam 540): SEM: 1.5 kV,  ESB grid 450V, pixel size x/y 5 nm, continuous mill-and-acquire mode; FIB: 3 nA , z-step 50 nm. Postprocessing: alignment with Fiji/ImageJ TrackEM2, cropped, inverted and blurred (Gaussian blur, sigma 2) with Fiji/ImageJ</details>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>FIB-SEM data stack of an Mbp-deficient shiverer mouse optic nerve</name>
        <directory>/data/FIB-SEM Data set 20171117_shiverer rOTO</directory>
        <category>micrographs - single frame</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>857</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>4650</imageWidth>
            <pixelWidth>50.0</pixelWidth>
            <imageHeight>5076</imageHeight>
            <pixelHeight>50.0</pixelHeight>
        </dimensions>
        <details>Optic nerve of a male Mbp-deficient mouse (shiverer), perfusion fixation: 2.5 % glutaraldehyde, 4 % formaldehyde, 0.5% NaCl, rOTO embedding, Durcupan.
FIB-SEM: SEM: 1.5 kV, ESB grid 450V, pixel size x/y 5 nm, continuous mill-and-acquire mode; FIB: 700 pA, z-step 50 nm
Postprocessing: alignment with Fiji/ImageJ TrackEM2, cropped, inverted and blurred (Gaussian blur, sigma 2) with Fiji/ImageJ</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
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