<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-10859" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2021-11-06</depositionDate>
            <releaseDate>2022-07-26</releaseDate>
            <updateDate>2022-07-26</updateDate>
        </keyDates>
        <title>In situ cryo-electron tomography of P. chlororaphis infected by 201phi2-1</title>
        <correspondingAuthor>
            <authorORCID>0000-0001-8943-1330</authorORCID>
            <firstName>Thomas</firstName>
            <middleName>Gerard</middleName>
            <lastName>Laughlin</lastName>
            <organization type="academic">Division of Biological Sciences, University of California-San Diego</organization>
            <townOrCity>San Diego</townOrCity>
            <country>United States</country>
            <postOrZipCode>92093</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator>
            <firstName>Elizabeth</firstName>
            <lastName>Villa</lastName>
            <organization type="academic">Division of Biological Sciences, University of California-San Diego; Howard Hughes Medical Institute</organization>
            <townOrCity>San Diego</townOrCity>
            <country>United States</country>
            <postOrZipCode>92093</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0001-8943-1330">Laughlin TG</author>
            <author>Deep A</author>
            <author>Prichard AM</author>
            <author>Seitz C</author>
            <author>Gu Y</author>
            <author authorORCID="0000-0001-7550-7752">Enustun E</author>
            <author>Suslov S</author>
            <author>Khanna K</author>
            <author>Birkholz EA</author>
            <author authorORCID="0000-0003-0377-1209">Armbruster E</author>
            <author>McCammon JA</author>
            <author>Amaro RE</author>
            <author>Pogliano J</author>
            <author>Corbett KD</author>
            <author>Villa E</author>
        </authorsList>
        <datasetSize>14.5</datasetSize>
        <entryDOI>10.6019/EMPIAR-10859</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>virus</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-25183</emdbEntry>
            <emdbEntry>EMD-25221</emdbEntry>
            <emdbEntry>EMD-25220</emdbEntry>
            <emdbEntry>EMD-25222</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="true">
                    <author authorORCID="0000-0001-8943-1330" order="1">Laughlin TG</author>
                    <author order="2">Deep A</author>
                    <author order="3">Prichard AM</author>
                    <author order="4">Seitz C</author>
                    <author order="5">Gu Y</author>
                    <author authorORCID="0000-0001-7550-7752" order="6">Enustun E</author>
                    <author order="7">Suslov S</author>
                    <author order="8">Khanna K</author>
                    <author order="9">Birkholz EA</author>
                    <author authorORCID="0000-0003-0377-1209" order="10">Armbruster E</author>
                    <author order="11">McCammon JA</author>
                    <author order="12">Amaro RE</author>
                    <author order="13">Pogliano J</author>
                    <author order="14">Corbett KD</author>
                    <author order="15">Villa E</author>
                    <editor order="1"> </editor>
                    <title>Architecture and self-assembly of the jumbo bacteriophage nuclear shell</title>
                    <journal>bioRxiv</journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country></country>
                    <year>2022</year>
                    <externalReferences type="doi">10.1101/2022.02.14.480162</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned tilt-movie frames as unormalized LZW-TIFF</name>
        <directory>/data/frames</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>269</numImagesOrTiltSeries>
        <framesPerImage>12</framesPerImage>
        <frameRange>
            <frameRangeMin>12</frameRangeMin>
        </frameRange>
        <voxelType>UNSIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>3710</imageWidth>
            <pixelWidth>3.457</pixelWidth>
            <imageHeight>3838</imageHeight>
            <pixelHeight>3.457</pixelHeight>
        </dimensions>
        <details>Gain reference present as MRC and requires a 270 degree CW rotation prior to application to TIFs. Fluence per tilt-movie is 2.6 electrons per square Angstrom. SerialEM mdoc files stored in data/mdocs, Warp/M alignment metadata stored in data/xmls_and_tomostars, and refined ribosomes positions in data/ribosome_coordinates (as M-format .star file).</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/ribosome_coordinates</pickedParticlesDirectory>
    </imageSet>
</entry>
