<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-10790" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2021-08-11</depositionDate>
            <releaseDate>2022-01-18</releaseDate>
            <updateDate>2022-01-18</updateDate>
        </keyDates>
        <title>High-resolution mapping of metal ions reveals principles of surface layer assembly in Caulobacter crescentus cells</title>
        <correspondingAuthor>
            <authorORCID>0000-0002-0017-2414</authorORCID>
            <firstName>Andriko</firstName>
            <lastName>von Kügelgen</lastName>
            <organization type="academic">Sir William Dunn School of Pathology, University of Oxford</organization>
            <street>South Parks Road</street>
            <townOrCity>Oxford</townOrCity>
            <stateOrProvince>Oxfordshire</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>OX1 3RE</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator>
            <authorORCID>0000-0002-0168-0277</authorORCID>
            <firstName>Tanmay</firstName>
            <middleName>AM</middleName>
            <lastName>Bharat</lastName>
            <organization type="academic">Sir William Dunn School of Pathology, University of Oxford</organization>
            <street>South Parks Road</street>
            <townOrCity>Oxford</townOrCity>
            <stateOrProvince>Oxfordshire</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>OX1 3RE</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-0017-2414">von Kugelgen A</author>
            <author authorORCID="0000-0002-0168-0277">Bharat TAM</author>
        </authorsList>
        <datasetSize>304.4</datasetSize>
        <entryDOI>10.6019/EMPIAR-10790</entryDOI>
        <experimentType>EMDB</experimentType>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-13355</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author order="1">Herdman M</author>
                    <author authorORCID="0000-0002-0017-2414" order="2">von Kügelgen A</author>
                    <author order="3">Kureisaite-Ciziene D</author>
                    <author order="4">Duman R</author>
                    <author order="5">El Omari K</author>
                    <author authorORCID="0000-0001-8329-5665" order="6">Garman EF</author>
                    <author order="7">Kjaer A</author>
                    <author order="8">Kolokouris D</author>
                    <author order="9">Löwe J</author>
                    <author order="10">Wagner A</author>
                    <author order="11">Stansfeld PJ</author>
                    <author authorORCID="0000-0002-0168-0277" order="12">Bharat TAM</author>
                    <title>High-resolution mapping of metal ions reveals principles of surface layer assembly in Caulobacter crescentus cells</title>
                    <journal>Structure</journal>
                    <journalAbbreviation>Structure</journalAbbreviation>
                    <country></country>
                    <year>2021</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1016/j.str.2021.10.012</externalReferences>
                    <externalReferences type="pubmed">34800371</externalReferences>
                    <details>The micrographs are the motion-corrected and dose-weighted averages of the raw 20 movie frames (accumulating 44.8 electrons per squared Angstrom in a 8 second exposure). The raw movies were collected using EPU and saved as non-gain corrected MRC files, which have been compressed with 'relion_convert_to_tif' before deposition (see https://relion.readthedocs.io/en/latest/Reference/MovieCompression.html). The original gain reference for the tilted and non-tilted data set have been deposited as well.</details>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned multiframe micrographs of RsaA_NTD spiral soaked with 5 mM HoCl3 for 2 hours (converted from .mrc into .tif with relion_convert_to_tiff)</name>
        <directory>/data/EMPAIR/movies_non_tilted</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>903</numImagesOrTiltSeries>
        <framesPerImage>20</framesPerImage>
        <voxelType>UNSIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>3838</imageWidth>
            <pixelWidth>1.08</pixelWidth>
            <imageHeight>3710</imageHeight>
            <pixelHeight>1.08</pixelHeight>
        </dimensions>
        <details>Unaligned multiframe micrographs of RsaA_NTD spiral soaked with 5 mM HoCl3 for 2 hours (converted from .mrc into .tif with relion_convert_to_tiff). The movies contain 20 frames accumulating 44.8 electrons per squared Angstrom in a 8 second exposure. The raw movies were collected using EPU and saved as non-gain corrected MRC files, which have been compressed with 'relion_convert_to_tif' before deposition (see https://relion.readthedocs.io/en/latest/Reference/MovieCompression.html).</details>
        <segmentationList/>
        <micrographsFilePattern>data/EMPAIR/movies_non_tilted/FoilHole_*_Data_*_*_*_*-*.tif</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Unaligned multiframe micrographs of RsaA_NTD spiral soaked with 5 mM HoCl3 for 2 hours with a 30 degree stage tilt (converted from .mrc into .tif with relion_convert_to_tiff)</name>
        <directory>/data/EMPAIR/movies_tilted</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>1115</numImagesOrTiltSeries>
        <framesPerImage>20</framesPerImage>
        <voxelType>UNSIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>3838</imageWidth>
            <pixelWidth>1.08</pixelWidth>
            <imageHeight>3710</imageHeight>
            <pixelHeight>1.08</pixelHeight>
        </dimensions>
        <details>Unaligned multiframe micrographs of RsaA_NTD spiral soaked with 5 mM HoCl3 for 2 hours with a 30 degree stage tilt (converted from .mrc into .tif with relion_convert_to_tiff). The movies contain 20 frames accumulating 44.8 electrons per squared Angstrom in a 8 second exposure. The raw movies were collected using EPU and saved as non-gain corrected MRC files, which have been compressed with 'relion_convert_to_tif' before deposition (see https://relion.readthedocs.io/en/latest/Reference/MovieCompression.html).</details>
        <segmentationList/>
        <micrographsFilePattern>data/EMPAIR/movies_tilted/FoilHole_*_Data_*_*_*_*-*.tif</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Aligned and dose-weighted micrographs of RsaA_NTD spiral soaked with 5 mM HoCl3 for 2 hours</name>
        <directory>/data/EMPAIR/micrographs_non_tilted</directory>
        <category>micrographs - single frame</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>903</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>3838</imageWidth>
            <pixelWidth>1.08</pixelWidth>
            <imageHeight>3710</imageHeight>
            <pixelHeight>1.08</pixelHeight>
        </dimensions>
        <details>Aligned and dose-weighted micrographs of RsaA_NTD spiral soaked with 5 mM HoCl3 for 2 hours.</details>
        <segmentationList/>
        <micrographsFilePattern>data/EMPAIR/micrographs_non_tilted/FoilHole_*_Data_*_*_*_*-*.mrc</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Aligned and dose-weighted micrographs of RsaA_NTD spiral soaked with 5 mM HoCl3 for 2 hours with a 30 degree stage tilt</name>
        <directory>/data/EMPAIR/micrographs_tilted</directory>
        <category>micrographs - single frame</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>1115</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>3838</imageWidth>
            <pixelWidth>1.08</pixelWidth>
            <imageHeight>3710</imageHeight>
            <pixelHeight>1.08</pixelHeight>
        </dimensions>
        <details>Aligned and dose-weighted micrographs of RsaA_NTD spiral soaked with 5 mM HoCl3 for 2 hours with a 30 degree stage tilt.</details>
        <segmentationList/>
        <micrographsFilePattern>data/EMPAIR/micrographs_tilted/FoilHole_*_Data_*_*_*_*-*.mrc</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Gain reference image of the non-tilted and tilted dataset in MRC format</name>
        <directory>/data/EMPAIR/gain_ref</directory>
        <category>micrographs - single frame</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>2</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>3838</imageWidth>
            <pixelWidth>1.08</pixelWidth>
            <imageHeight>3710</imageHeight>
            <pixelHeight>1.08</pixelHeight>
        </dimensions>
        <details>Gain reference image of the non-tilted and tilted dataset in MRC format</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
