<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-10680" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2021-02-02</depositionDate>
            <releaseDate>2021-07-30</releaseDate>
            <updateDate>2021-07-30</updateDate>
        </keyDates>
        <title>Structural basis for VIPP1 oligomerization and maintenance of thylakoid membrane integrity</title>
        <correspondingAuthor>
            <authorORCID>0000-0003-4247-4303</authorORCID>
            <firstName>Ricardo</firstName>
            <lastName>Righetto</lastName>
            <organization type="academic">Helmholtz Zentrum München</organization>
            <townOrCity>Munich</townOrCity>
            <country>Germany</country>
            <postOrZipCode>85764</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator>
            <authorORCID>0000-0002-0941-4387</authorORCID>
            <firstName>Benjamin</firstName>
            <middleName>D.</middleName>
            <lastName>Engel</lastName>
            <organization type="academic">Helmholtz Pioneer Campus</organization>
            <townOrCity>Munich</townOrCity>
            <country>Germany</country>
            <postOrZipCode>85764</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author>Gupta TK</author>
            <author authorORCID="0000-0002-8350-6503">Klumpe S</author>
            <author>Gries K</author>
            <author authorORCID="0000-0002-0986-2868">Strauss M</author>
            <author>Rudack T</author>
            <author>Schuller JM</author>
            <author>Schroda M</author>
            <author authorORCID="0000-0002-0941-4387">Engel BD</author>
        </authorsList>
        <datasetSize units="TB">2.0</datasetSize>
        <entryDOI>10.6019/EMPIAR-10680</entryDOI>
        <experimentType>EMDB</experimentType>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-12712</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author order="1">Gupta TK</author>
                    <author authorORCID="0000-0002-8350-6503" order="2">Klumpe S</author>
                    <author order="3">Gries K</author>
                    <author order="4">Heinz S</author>
                    <author order="5">Wietrzynski W</author>
                    <author order="6">Ohnishi N</author>
                    <author order="7">Niemeyer J</author>
                    <author order="8">Spaniol B</author>
                    <author order="9">Schaffer M</author>
                    <author order="10">Rast A</author>
                    <author order="11">Ostermeier M</author>
                    <author authorORCID="0000-0002-0986-2868" order="12">Strauss M</author>
                    <author order="13">Plitzko JM</author>
                    <author order="14">Baumeister W</author>
                    <author order="15">Rudack T</author>
                    <author order="16">Sakamoto W</author>
                    <author order="17">Nickelsen J</author>
                    <author order="18">Schuller JM</author>
                    <author order="19">Schroda M</author>
                    <author authorORCID="0000-0002-0941-4387" order="20">Engel BD</author>
                    <title>Structural basis for VIPP1 oligomerization and maintenance of thylakoid membrane integrity</title>
                    <journal>Cell</journal>
                    <journalAbbreviation>Cell</journalAbbreviation>
                    <country></country>
                    <issue>14</issue>
                    <volume>184</volume>
                    <firstPage>3643</firstPage>
                    <lastPage>3659.e23</lastPage>
                    <year>2021</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1016/j.cell.2021.05.011</externalReferences>
                    <externalReferences type="pubmed">34166613</externalReferences>
                    <details>Raw movie data from Titan Krios operated at 300 kV with a K2 direct electron detector operated in counting mode. Pixel size is 1.35 Å.</details>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned frames of VIPP1 from K2 operated in counting mode</name>
        <directory>/data/frames</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>8120</numImagesOrTiltSeries>
        <framesPerImage>80</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>3838</imageWidth>
            <pixelWidth>1.35</pixelWidth>
            <imageHeight>3710</imageHeight>
            <pixelHeight>1.35</pixelHeight>
        </dimensions>
        <details>Particle coordinates correspond to initial picking using crYOLO. Micrographs where particles were not detected do not have an associated .box file.
The gain reference is provided in MRC format inside the data/gain/ directory.

Data acquisition details:
Images were acquired on a Titan Krios microscope (FEI, Thermo Fisher Scientific) at 300 kV, using a post-column energy filter (Quantum, Gatan) and a K2 Summit direct electron detector (Gatan) operated in counting mode. For each image, 80 frames were acquired over 8 sec, with a total dose of ~45 e−/Å2 and a calibrated pixel size of 1.35 Å. A total of 8120 images were recorded, using a defocus range of −0.5 to −3.5 μm.</details>
        <segmentationList/>
        <micrographsFilePattern>data/frames/*.tif</micrographsFilePattern>
        <pickedParticlesFilePattern>data/frames/*.box</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/frames</pickedParticlesDirectory>
    </imageSet>
</entry>
