<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-10489" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2020-07-04</depositionDate>
            <releaseDate>2020-09-02</releaseDate>
            <updateDate>2021-05-07</updateDate>
        </keyDates>
        <title>Native Pyruvate Dehydrogenase Complex from Neurospora crassa</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0002-6247-4063</authorORCID>
            <firstName>Bjoern</firstName>
            <middleName>O.</middleName>
            <lastName>Forsberg</lastName>
            <organization type="academic">Stockholm University, Science for Life Laboratory</organization>
            <street>Tomtebodavägen 23A</street>
            <townOrCity>SOLNA</townOrCity>
            <country>Sweden</country>
            <postOrZipCode>17165</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0002-2734-2794</authorORCID>
            <firstName>Erik</firstName>
            <lastName>Lindahl</lastName>
            <organization type="academic">Stockholm University, Science for Life Laboratory</organization>
            <street>Tomtebodavägen 23A</street>
            <townOrCity>SOLNA</townOrCity>
            <stateOrProvince>SOLNA</stateOrProvince>
            <country>Sweden</country>
            <postOrZipCode>17165</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-6247-4063">Forsberg BO</author>
            <author authorORCID="0000-0003-2221-482X">Aibara S</author>
            <author authorORCID="0000-0003-2049-3378">Howard RJ</author>
            <author authorORCID="0000-0002-8473-118X">Mortezaei N</author>
            <author authorORCID="0000-0002-2734-2794">Lindahl E</author>
        </authorsList>
        <datasetSize units="GB">305.5</datasetSize>
        <entryDOI>10.6019/EMPIAR-10489</entryDOI>
        <experimentType>EMDB</experimentType>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-11266</emdbEntry>
            <emdbEntry>EMD-11267</emdbEntry>
            <emdbEntry>EMD-11268</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0002-6247-4063" order="1">Forsberg BO</author>
                    <author authorORCID="0000-0003-2221-482X" order="2">Aibara S</author>
                    <author authorORCID="0000-0003-2049-3378" order="3">Howard RJ</author>
                    <author authorORCID="0000-0002-8473-118X" order="4">Mortezaei N</author>
                    <author authorORCID="0000-0002-2734-2794" order="5">Lindahl E</author>
                    <title>Arrangement and symmetry of the fungal E3BP-containing core of the pyruvate dehydrogenase complex</title>
                    <journal>Nature communications</journal>
                    <journalAbbreviation>Nat Commun</journalAbbreviation>
                    <country></country>
                    <issue>1</issue>
                    <volume>11</volume>
                    <year>2020</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1038/s41467-020-18401-z</externalReferences>
                    <externalReferences type="pubmed">32938938</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Aligned and dose-weighted micrographs of native N. crassa Pyruvate dehydrogenase</name>
        <directory>/data/MG</directory>
        <category>micrographs - single frame</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>4887</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>4096</imageWidth>
            <pixelWidth>1.25</pixelWidth>
            <imageHeight>4096</imageHeight>
            <pixelHeight>1.25</pixelHeight>
        </dimensions>
        <details>All motion-corrected, dose-weighted and gain-corrected micrographs are contained in the directory "MG".

No extracted particles are included. Instead, particles can be re-extracted using the .star files. Estimated CTF values per-micrograph is found in the file micrographs_ctf.star, which should be used to re-extract particles defined in any particles.star-file. The latter files contain refined positions and angle assignments.

all_particles.star contain all particles considered to be non-junk, PDC-particles. Angle assignments are based on classification of these particles into class X, class Y, and class N, as denoted in the paper "Arrangement and symmetry of the fungal E3BP-containing core of the Pyruvate Dehydrogenase Complex". Two separate files contain the re-refined angles of class X and Yi respectively, based on gold-standard refinement using relion.</details>
        <segmentationList/>
        <micrographsFilePattern>data/MG/*mrc</micrographsFilePattern>
        <pickedParticlesFilePattern>data/all_particles.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
