<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-10460" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2020-07-02</depositionDate>
            <releaseDate>2020-12-09</releaseDate>
            <updateDate>2022-02-28</updateDate>
        </keyDates>
        <title>TEM images of a Zebrafish hindbrain cells containing Toxoplasma gondii tachizoites</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0002-5703-2922</authorORCID>
            <firstName>Marie-Charlotte</firstName>
            <lastName>Domart</lastName>
            <organization type="academic">Francis Crick Institute, Electron Microscopy STP</organization>
            <street>1 Midland Road</street>
            <townOrCity>London</townOrCity>
            <stateOrProvince>London</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>NW1 1AT</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0002-5703-2922</authorORCID>
            <firstName>Marie-Charlotte</firstName>
            <lastName>Domart</lastName>
            <organization type="academic">Francis Crick Institute, Electron Microscopy STP</organization>
            <street>1 Midland Road</street>
            <townOrCity>London</townOrCity>
            <stateOrProvince>London</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>NW1 1AT</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-5703-2922">Domart MC</author>
            <author>Collinson L</author>
        </authorsList>
        <datasetSize units="GB">3.4</datasetSize>
        <entryDOI>10.6019/EMPIAR-10460</entryDOI>
        <experimentType>CLEM</experimentType>
    </admin>
    <crossReferences>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0002-3925-8557" order="1">Yoshida N</author>
                    <author authorORCID="0000-0002-5703-2922" order="2">Domart MC</author>
                    <author order="3">Peddie CJ</author>
                    <author authorORCID="0000-0003-2458-4904" order="4">Yakimovich A</author>
                    <author order="5">Mazon-Moya MJ</author>
                    <author authorORCID="0000-0003-2921-0004" order="6">Hawkins TA</author>
                    <author order="7">Collinson L</author>
                    <author order="8">Mercer J</author>
                    <author authorORCID="0000-0002-9515-3442" order="9">Frickel EM</author>
                    <author authorORCID="0000-0002-7286-6503" order="10">Mostowy S</author>
                    <title>The zebrafish as a novel model for the &lt;i&gt;in vivo&lt;/i&gt; study of &lt;i&gt;Toxoplasma gondii&lt;/i&gt; replication and interaction with macrophages</title>
                    <journal>Disease models &amp; mechanisms</journal>
                    <journalAbbreviation>Dis Model Mech</journalAbbreviation>
                    <country></country>
                    <issue>7</issue>
                    <volume>13</volume>
                    <year>2020</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1242/dmm.043091</externalReferences>
                    <externalReferences type="pubmed">32461265</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
        <relatedBioStudiesEntries>
            <bioStudiesEntry>S-BSST429</bioStudiesEntry>
        </relatedBioStudiesEntries>
    </crossReferences>
    <imageSet>
        <name>Non aligned TEM image stack of a zebrafish hindbrain cell containing a Toxoplasma Gondii  tachizoite (toxo 1)</name>
        <directory>/data/P400_TEM</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>1</numImagesOrTiltSeries>
        <framesPerImage>68</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>4096</imageWidth>
            <pixelWidth>700.0</pixelWidth>
            <imageHeight>4096</imageHeight>
            <pixelHeight>700.0</pixelHeight>
        </dimensions>
        <details>Serial section TEM images of a whole Toxoplasma gondii tachizoite (Toxo 1 - 68 consecutive sections). 1.65nm pixels in X, Y. 70 nm sections.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Non aligned TEM image stack of a zebrafish hindbrain cell containing a Toxoplasma Gondii tachizoite (toxo 2)</name>
        <directory>/data/P400_TEM</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>1</numImagesOrTiltSeries>
        <framesPerImage>77</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>4096</imageWidth>
            <pixelWidth>700.0</pixelWidth>
            <imageHeight>4096</imageHeight>
            <pixelHeight>700.0</pixelHeight>
        </dimensions>
        <details>Serial section TEM images of a whole Toxoplasma gondii tachizoite (Toxo 2 - 77 consecutive sections). 1.65nm pixels in X, Y. 70 nm sections.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Non aligned TEM image stack of a zebrafish hindbrain cell containing a Toxoplasma Gondii tachizoite (toxo 3)</name>
        <directory>/data/P400_TEM</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>1</numImagesOrTiltSeries>
        <framesPerImage>71</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>4096</imageWidth>
            <pixelWidth>700.0</pixelWidth>
            <imageHeight>4096</imageHeight>
            <pixelHeight>700.0</pixelHeight>
        </dimensions>
        <details>Serial section TEM images of a whole Toxoplasma gondii tachizoite (Toxo 3 - 71 consecutive sections). 1.65nm pixels in X, Y. 70 nm sections.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
