<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-10455" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2020-06-26</depositionDate>
            <releaseDate>2020-07-06</releaseDate>
            <updateDate>2020-07-06</updateDate>
        </keyDates>
        <title>Single particle cryo-EM dataset of human adenovirus HAdV-D26</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0002-0348-7323</authorORCID>
            <firstName>Juha</firstName>
            <middleName>T</middleName>
            <lastName>Huiskonen</lastName>
            <organization type="academic">Helsinki Institute of Life Science HiLIFE, University of Helsinki</organization>
            <street>Viikinkaari 1, Biocenter 3</street>
            <townOrCity>Helsinki</townOrCity>
            <stateOrProvince>Helsinki</stateOrProvince>
            <country>Finland</country>
            <postOrZipCode>00014</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0002-0348-7323</authorORCID>
            <firstName>Juha</firstName>
            <middleName>T</middleName>
            <lastName>Huiskonen</lastName>
            <organization type="academic">Helsinki Institute of Life Science HiLIFE, University of Helsinki</organization>
            <street>Viikinkaari 1, Biocenter 3</street>
            <townOrCity>Helsinki</townOrCity>
            <stateOrProvince>Helsinki</stateOrProvince>
            <country>Finland</country>
            <postOrZipCode>00014</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-3772-7663">Abrishami V</author>
            <author>Reddy VS</author>
            <author authorORCID="0000-0002-0348-7323">Huiskonen JT</author>
        </authorsList>
        <datasetSize units="GB">46.5</datasetSize>
        <entryDOI>10.6019/EMPIAR-10455</entryDOI>
        <experimentType>EMDB</experimentType>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-11008</emdbEntry>
            <emdbEntry>EMD-11009</emdbEntry>
            <emdbEntry>EMD-11010</emdbEntry>
            <emdbEntry>EMD-11011</emdbEntry>
            <emdbEntry>EMD-11012</emdbEntry>
            <emdbEntry>EMD-11013</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0002-3772-7663" order="1">Abrishami V</author>
                    <author authorORCID="0000-0003-1192-5917" order="2">Ilca SL</author>
                    <author authorORCID="0000-0002-6168-3859" order="3">Gomez-Blanco J</author>
                    <author authorORCID="0000-0003-4937-1825" order="4">Rissanen I</author>
                    <author authorORCID="0000-0002-3320-1269" order="5">De la Rosa-Trevín JM</author>
                    <author order="6">Reddy VS</author>
                    <author authorORCID="0000-0003-0788-8447" order="7">Carazo JM</author>
                    <author authorORCID="0000-0002-0348-7323" order="8">Huiskonen JT</author>
                    <title>Localized reconstruction in Scipion expedites the analysis of symmetry mismatches in cryo-EM data</title>
                    <journal>Progress in biophysics and molecular biology</journal>
                    <journalAbbreviation>Prog. Biophys. Mol. Biol.</journalAbbreviation>
                    <country></country>
                    <year>2020</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1016/j.pbiomolbio.2020.05.004</externalReferences>
                    <externalReferences type="pubmed">32470354</externalReferences>
                </journalCitation>
            </universalCitation>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author order="1">Yu X</author>
                    <author order="2">Veesler D</author>
                    <author order="3">Campbell MG</author>
                    <author order="4">Barry ME</author>
                    <author order="5">Asturias FJ</author>
                    <author order="6">Barry MA</author>
                    <title>Cryo-EM structure of human adenovirus D26 reveals the conservation of structural organization among human adenoviruses</title>
                    <journal>Science advances</journal>
                    <journalAbbreviation>Sci Adv</journalAbbreviation>
                    <country></country>
                    <issue>5</issue>
                    <volume>3</volume>
                    <year>2017</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1126/sciadv.1602670</externalReferences>
                    <externalReferences type="pubmed">28508067</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Particle stacks of human adenovirus HAdV-D26</name>
        <directory>/data</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRCS</headerFormat>
        <dataFormat>MRCS</dataFormat>
        <numImagesOrTiltSeries>8684</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>1200</imageWidth>
            <pixelWidth>1.31</pixelWidth>
            <imageHeight>1200</imageHeight>
            <pixelHeight>1.31</pixelHeight>
        </dimensions>
        <details>Particle images of human adenovirus D26 with alignment parameters and CTF information. Four Chimera marker files (hexon[1-4].cmm) are provided to be used for the localized reconstruction of the hexons 1-4.

MRCS files have variable numbers of images. Images are based on 38 frames of which frames 7 - 38 were used.</details>
        <segmentationList/>
        <micrographsFilePattern>data/14oct18a_*.mrcs</micrographsFilePattern>
        <pickedParticlesFilePattern>data/input_particles.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data</pickedParticlesDirectory>
    </imageSet>
</entry>
