REL 2020-01-30 2020-06-12 2021-02-12 0000-0003-4247-4303 Ricardo Righetto Center for Cellular Imaging and NanoAnalytics, Biozentrum, University of Basel Mattenstrasse 26 Basel Switzerland 4058 0000-0002-1185-4592 Henning Stahlberg Center for Cellular Imaging and NanoAnalytics, Biozentrum, University of Basel Mattenstrasse 26 Basel Switzerland 4058 Timm Maier Biozentrum, University of Basel Klingelbergstrasse 50/70 Basel Switzerland 4056 Righetto RD Anton L Adaixo R Jakob RP Zivanov J Mahi MA Ringler P Schwede T Maier T Stahlberg H 839.9 10.6019/EMPIAR-10389 EMDB EMD-10835 Righetto RD Anton L Adaixo R Jakob RP Zivanov J Mahi MA Ringler P Schwede T Maier T Stahlberg H Nature communications Nat Commun 1 11 2020 English 10.1038/s41467-020-18870-2 33037208 Aligned averages of Y. enterocolitica urease /data/alignaver micrographs - single frame MRC MRC 4313 1 32 BIT FLOAT 3838 0.639 3710 0.639

Y. enterocolitica Urease dataset ******************************** Acceleration voltage = 300 kV Cs = 2.7 mm Physical pixel size = 0.639 A/px Total exposure = 42 e- / A^2 distributed over 40 frames for 8 s Detector = Gatan K2 with Quantum-LS energy filter (20 slit eV width) Data structure: alignaver/ : This directory contains dose-weighted aligned movie averages from MotionCor2, the coordinates of the Gautomatch picked particles (STAR and BOX formats), and the meta-data for the Bayesian polishing (STAR format). gainref/ : This directory contains the gain references in DM4 and MRC formats, pixel defect lists in TXT format. raw/ : raw movies in TIFF format micrographs_multi+single_joined.star : this file contains all the micrographs used for processing with their respective _rlnBeamTiltClass label. run_ct14_data.star : this file contains the metadata for the particles used in the final reconstruction. NOTE: The directories contain all data from the multi- and single-shot movies together, as specified by the file name.

data/alignaver/*.mrc data/alignaver/*_automatch.star data/alignaver Raw multi-frame micrographs of Y. enterocolitica urease /data/raw micrographs - multiframe TIFF TIFF 4314 40 UNSIGNED 16 BIT INTEGER 3838 0.639 3710 0.639

Dose rate is 1.05 e-/A^2. Y. enterocolitica Urease dataset ******************************** Acceleration voltage = 300 kV Cs = 2.7 mm Physical pixel size = 0.639 A/px Total exposure = 42 e- / A^2 distributed over 40 frames for 8 s Detector = Gatan K2 with Quantum-LS energy filter (20 slit eV width) Data structure: alignaver/ : This directory contains dose-weighted aligned movie averages from MotionCor2, the coordinates of the Gautomatch picked particles (STAR and BOX formats), and the meta-data for the Bayesian polishing (STAR format). gainref/ : This directory contains the gain references in DM4 and MRC formats, pixel defect lists in TXT format. raw/ : raw movies in TIFF format micrographs_multi+single_joined.star : this file contains all the micrographs used for processing with their respective _rlnBeamTiltClass label. run_ct14_data.star : this file contains the metadata for the particles used in the final reconstruction. NOTE: The directories contain all data from the multi- and single-shot movies together, as specified by the file name.

data/raw/*.tif data/alignaver/*_automatch.star data/alignaver