<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-10349" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2020-01-21</depositionDate>
            <releaseDate>2020-03-20</releaseDate>
            <updateDate>2020-01-23</updateDate>
        </keyDates>
        <title>Cryo Electron Tomograms of Membrane Fractions of Rabbit Skeletal Muscle for Structural Determination of RyR1 in SR Vesicles</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0003-3550-6274</authorORCID>
            <firstName>Misha</firstName>
            <lastName>Kudryashev</lastName>
            <organization type="academic">Max Planck  Institute for Biophysics</organization>
            <street>Max von Laue Strasse 3</street>
            <townOrCity>Frankfurt am Main</townOrCity>
            <country>Germany</country>
            <postOrZipCode>60438</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0003-3550-6274</authorORCID>
            <firstName>Misha</firstName>
            <lastName>Kudryashev</lastName>
            <organization type="academic">Max Planck  Institute for Biophysics</organization>
            <street>Max von Laue Strasse 3</street>
            <townOrCity>Frankfurt am Main</townOrCity>
            <country>Germany</country>
            <postOrZipCode>60438</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0001-5730-5567">Chen W</author>
            <author authorORCID="0000-0003-3550-6274">Kudryashev M</author>
        </authorsList>
        <datasetSize units="GB">254.2</datasetSize>
        <entryDOI>10.6019/EMPIAR-10349</entryDOI>
        <experimentType>EMDB</experimentType>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-10637</emdbEntry>
            <emdbEntry>EMD-10638</emdbEntry>
            <emdbEntry>EMD-10639</emdbEntry>
            <emdbEntry>EMD-10640</emdbEntry>
            <emdbEntry>EMD-10641</emdbEntry>
            <emdbEntry>EMD-10642</emdbEntry>
            <emdbEntry>EMD-10643</emdbEntry>
            <emdbEntry>EMD-10644</emdbEntry>
            <emdbEntry>EMD-10645</emdbEntry>
            <emdbEntry>EMD-10646</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0001-5730-5567" order="1">Chen W</author>
                    <author authorORCID="0000-0003-3550-6274" order="2">Kudryashev M</author>
                    <title>Structure of RyR1 in native membranes</title>
                    <journal>EMBO reports</journal>
                    <journalAbbreviation>EMBO Rep.</journalAbbreviation>
                    <country>Germany</country>
                    <year>2020</year>
                    <language>English</language>
                    <externalReferences type="doi">10.15252/embr.201949891</externalReferences>
                    <externalReferences type="pubmed">32147968</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>82 tilt series (frames aligned my motioncorr2) in .st stacks (mrc format for imod) including .tlt, .xf and .defocus files</name>
        <directory>/data/deposition_empiar</directory>
        <category>tilt series</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>82</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>3710</imageWidth>
            <pixelWidth>2.7</pixelWidth>
            <imageHeight>3838</imageHeight>
            <pixelHeight>2.7</pixelHeight>
        </dimensions>
        <details>These are tilt series which we used for generation of the 12.6 A structure or RyR1 in native membranes. the notable repeating molecules also include ATP synthase and  a transporter SERCA. Details about the RYR1 structure can be found in the publication. Some tomograms have a higher exposure for the untilted micrograph which we use for "hybrid StA".

The particle folder contains 2547 unbinned CTF-corrected volumes which were used to generate the structure. The particles have not been exposure filtered. There is a Dynamo-style *.tbl which has metadata for the particles and the alignment parameters. Column 34 has class assignments for classification into 4 classes.</details>
        <segmentationList/>
        <micrographsFilePattern>data/deposition_empiar/*st</micrographsFilePattern>
        <pickedParticlesFilePattern>data/deposition_particles/*tbl</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/deposition_particles</pickedParticlesDirectory>
    </imageSet>
</entry>
