<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-10312" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2019-08-13</depositionDate>
            <releaseDate>2020-09-11</releaseDate>
            <updateDate>2020-10-02</updateDate>
        </keyDates>
        <title>Spatial Intra- and Intercellular Alignment of Respiratory Cilia and its Relation to Function</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0001-7725-5579</authorORCID>
            <firstName>Benoit</firstName>
            <lastName>Zuber</lastName>
            <organization type="academic">Institute of Anatomy, University of Bern</organization>
            <street>Baltzerstrasse 2</street>
            <townOrCity>Bern</townOrCity>
            <stateOrProvince>BE</stateOrProvince>
            <country>Switzerland</country>
            <postOrZipCode>3012</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <firstName>Stefan</firstName>
            <middleName>A.</middleName>
            <lastName>Tschanz</lastName>
            <organization type="academic">Institute of Anatomy, University of Bern</organization>
            <street>Baltzerstrasse 2</street>
            <townOrCity>Bern</townOrCity>
            <stateOrProvince>BE</stateOrProvince>
            <country>Switzerland</country>
            <postOrZipCode>3012</postOrZipCode>
        </principalInvestigator>
        <principalInvestigator private="true">
            <firstName>Martin</firstName>
            <lastName>Frenz</lastName>
            <organization type="academic">Institute of Applied Physics, University of Bern</organization>
            <street>Sidlerstrasse 5</street>
            <townOrCity>Bern</townOrCity>
            <stateOrProvince>BE</stateOrProvince>
            <country>Switzerland</country>
            <postOrZipCode>3012</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0003-4900-8807">Schneiter M</author>
            <author authorORCID="0000-0002-1204-8437">Halm S</author>
            <author>Odriozola A</author>
            <author>Mogel H</author>
            <author>Rička J</author>
            <author authorORCID="0000-0002-4699-5125">Stoffel MH</author>
            <author authorORCID="0000-0001-7725-5579">Zuber B</author>
            <author>Frenz M</author>
            <author authorORCID="0000-0003-3880-4437">Tschanz SA</author>
        </authorsList>
        <datasetSize units="GB">67.5</datasetSize>
        <entryDOI>10.6019/EMPIAR-10312</entryDOI>
        <experimentType>SBF-SEM</experimentType>
    </admin>
    <crossReferences>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="true">
                    <author authorORCID="0000-0003-4900-8807" order="1">Schneiter M</author>
                    <author authorORCID="0000-0002-1204-8437" order="2">Halm S</author>
                    <author order="3">Odriozola A</author>
                    <author order="4">Mogel H</author>
                    <author order="5">Rička J</author>
                    <author authorORCID="0000-0002-4699-5125" order="6">Stoffel MH</author>
                    <author authorORCID="0000-0001-7725-5579" order="7">Zuber B</author>
                    <author order="8">Frenz M</author>
                    <author authorORCID="0000-0003-3880-4437" order="9">Tschanz SA</author>
                    <title>Multi-scale Alignment of Respiratory Cilia and its Relation to Mucociliary Function</title>
                    <journal>bioRxiv</journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country></country>
                    <year>2019</year>
                    <externalReferences type="doi">10.1101/735332</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Trachea SBF SEM</name>
        <directory>/data</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>16</numImagesOrTiltSeries>
        <framesPerImage>100</framesPerImage>
        <frameRange>
            <frameRangeMin>58</frameRangeMin>
            <frameRangeMax>184</frameRangeMax>
        </frameRange>
        <voxelType>SIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>variable</imageWidth>
            <pixelWidth>variable</pixelWidth>
            <imageHeight>variable</imageHeight>
            <pixelHeight>variable</pixelHeight>
        </dimensions>
        <details>Animal 1 and Animal 2 (Sample 1-8): 2048x2048Pixel. Pixelsize 6nm.
Animal 3 and Animal 4 (Sample 9-16): 6144x6144. Pixelsize 2nm.

Images per stack:
Animal1_CT1_Sample2_Headdown     103 images
Animal1_CT2_Sample4_Headdown    113images
Animal1_LA1_Sample1_Headright   100 images
Animal1_LA2_Sample5_Headup   100 images
Animal2_CT1_Sample7_Headup   100 images
Animal2_CT2_Sample8_Headup   150 images
Animal2_LA1_Sample3_Headup   100 images
Animal2_LA2_Sample6_Headup   100 images
Animal3_CT1_Sample11_Headright   184 images
Animal3_CT2_Sample12_Headright   100 images
Animal3_LA1_Sample9_Headright   95 images
Animal3_LA2_Sample10_Headright   100 images
Animal4_CT1_Sample15_Headright   100 images
Animal4_CT2_Sample16_Headright   58 images
Animal4_LA1_Sample13_Headright   100 images
Animal4_LA2_Sample14_Headright  127 images</details>
        <segmentationList/>
        <micrographsFilePattern>data/Animal*_*_Sample*_Head*.*</micrographsFilePattern>
        <pickedParticlesFilePattern>data</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data</pickedParticlesDirectory>
    </imageSet>
</entry>
