<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-10294" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2019-07-12</depositionDate>
            <releaseDate>2019-10-04</releaseDate>
            <updateDate>2019-10-11</updateDate>
        </keyDates>
        <title>Single particle cryo-EM dataset of clathrin cages with phase flipping suitable for refinement</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0003-3364-7946</authorORCID>
            <firstName>Corinne</firstName>
            <middleName>J</middleName>
            <lastName>Smith</lastName>
            <organization type="academic">University of Warwick</organization>
            <street>Gibbet Hill Road</street>
            <townOrCity>Coventry</townOrCity>
            <stateOrProvince>West Midlands</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>CV47AL</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0003-3364-7946</authorORCID>
            <firstName>Corinne</firstName>
            <middleName>J</middleName>
            <lastName>Smith</lastName>
            <organization type="academic">University of Warwick</organization>
            <street>Gibbet Hill Road</street>
            <townOrCity>Coventry</townOrCity>
            <stateOrProvince>West Midlands</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>CV47AL</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-1717-8134">Morris KL</author>
            <author authorORCID="0000-0002-6924-9985">Jones JR</author>
            <author authorORCID="0000-0001-9712-1519">Halebian M</author>
            <author>Wu S</author>
            <author>Baker M</author>
            <author authorORCID="0000-0001-9195-2282">Armache JP</author>
            <author>Avila Ibarra A</author>
            <author authorORCID="0000-0003-0320-0895">Sessions RB</author>
            <author authorORCID="0000-0001-8776-3518">Cameron AD</author>
            <author>Cheng Y</author>
            <author authorORCID="0000-0003-3364-7946">Smith CJ</author>
        </authorsList>
        <datasetSize units="GB">11.9</datasetSize>
        <entryDOI>10.6019/EMPIAR-10294</entryDOI>
        <experimentType>EMDB</experimentType>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-0120</emdbEntry>
            <emdbEntry>EMD-0118</emdbEntry>
            <emdbEntry>EMD-0116</emdbEntry>
            <emdbEntry>EMD-0115</emdbEntry>
            <emdbEntry>EMD-0114</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0003-3364-7946" order="11">Smith CJ</author>
                    <author authorORCID="0000-0002-1717-8134" order="1">Morris KL</author>
                    <author authorORCID="0000-0002-6924-9985" order="2">Jones JR</author>
                    <author authorORCID="0000-0001-9712-1519" order="3">Halebian M</author>
                    <author order="4">Wu S</author>
                    <author order="5">Baker M</author>
                    <author authorORCID="0000-0001-9195-2282" order="6">Armache JP</author>
                    <author order="7">Avila Ibarra A</author>
                    <author authorORCID="0000-0003-0320-0895" order="8">Sessions RB</author>
                    <author authorORCID="0000-0001-8776-3518" order="9">Cameron AD</author>
                    <author order="10">Cheng Y</author>
                    <title>Cryo-EM of multiple cage architectures reveals a universal mode of clathrin self-assembly</title>
                    <journal>Nature structural &amp; molecular biology</journal>
                    <journalAbbreviation>Nat. Struct. Mol. Biol.</journalAbbreviation>
                    <country></country>
                    <issue>10</issue>
                    <volume>26</volume>
                    <firstPage>890</firstPage>
                    <lastPage>898</lastPage>
                    <year>2019</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1038/s41594-019-0292-0</externalReferences>
                    <externalReferences type="pubmed">31582853</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Clathrin cage particle images with phase flipping</name>
        <directory>/data/job004/Micrographs</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRCS</headerFormat>
        <dataFormat>MRCS</dataFormat>
        <numImagesOrTiltSeries>12785</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>500</imageWidth>
            <pixelWidth>1.705</pixelWidth>
            <imageHeight>500</imageHeight>
            <pixelHeight>1.705</pixelHeight>
        </dimensions>
        <details>Particle images for whole cages with phase flipping to have a tight box around the cage. Particle images are extracted from MotionCor2 dose weighted micrographs. Star files for the refinement of the five different cage types are found in data/starfile_whole_cage/*.star, each refinement uses symmetry for the respective cage type.</details>
        <segmentationList/>
        <micrographsFilePattern>data/job004/Micrographs/FII_stack_*_bin1_*_Raw_DW.mrcs</micrographsFilePattern>
        <pickedParticlesFilePattern>data/job004/Micrographs/FII_stack_*_bin1_*_Raw_DW_extract.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/job004/Micrographs</pickedParticlesDirectory>
    </imageSet>
</entry>
