<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-10076" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2016-10-31</depositionDate>
            <releaseDate>2016-12-02</releaseDate>
            <updateDate>2016-12-02</updateDate>
        </keyDates>
        <title>CryoEM Dataset of L17-Depleted 50S Ribosomal Intermediates</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0001-6656-6320</authorORCID>
            <firstName>Yong Zi</firstName>
            <lastName>Tan</lastName>
            <organization type="academic">New York Structural Biology Center/Columbia University</organization>
            <street>89 Convent Ave</street>
            <townOrCity>New York</townOrCity>
            <stateOrProvince>New York</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>10027</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0002-8124-7472</authorORCID>
            <firstName>Dmitry</firstName>
            <lastName>Lyumkis</lastName>
            <organization type="academic">Laboratory of Genetics and Helmsley Center for Genomic Medicine, The Salk Institute for Biological Studies</organization>
            <street>10010 North Torrey Pines Road</street>
            <townOrCity>La Jolla</townOrCity>
            <stateOrProvince>California</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>92037</postOrZipCode>
        </principalInvestigator>
        <principalInvestigator private="true">
            <authorORCID>0000-0002-8772-468X</authorORCID>
            <firstName>Williamson</firstName>
            <middleName>R</middleName>
            <lastName>James</lastName>
            <organization type="academic">Department of Integrative Structural and Computational Biology, Department of Chemistry, and The Skaggs Institute for Chemical Biology, The Scripps Research Institute</organization>
            <street>10550 North Torrey Pines Road</street>
            <townOrCity>La Jolla</townOrCity>
            <stateOrProvince>California</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>92037</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-8858-8907">Davis JH</author>
            <author authorORCID="0000-0001-6656-6320">Tan YZ</author>
            <author authorORCID="0000-0002-0624-5020">Carragher B</author>
            <author authorORCID="0000-0002-3287-121X">Potter CS</author>
            <author authorORCID="0000-0002-8124-7472">Lyumkis D</author>
            <author authorORCID="0000-0002-8772-468X">Williamson JR</author>
        </authorsList>
        <datasetSize units="GB">50.3</datasetSize>
        <entryDOI>10.6019/EMPIAR-10076</entryDOI>
        <experimentType>EMDB</experimentType>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-8434</emdbEntry>
            <emdbEntry>EMD-8440</emdbEntry>
            <emdbEntry>EMD-8441</emdbEntry>
            <emdbEntry>EMD-8442</emdbEntry>
            <emdbEntry>EMD-8443</emdbEntry>
            <emdbEntry>EMD-8444</emdbEntry>
            <emdbEntry>EMD-8445</emdbEntry>
            <emdbEntry>EMD-8446</emdbEntry>
            <emdbEntry>EMD-8447</emdbEntry>
            <emdbEntry>EMD-8448</emdbEntry>
            <emdbEntry>EMD-8449</emdbEntry>
            <emdbEntry>EMD-8450</emdbEntry>
            <emdbEntry>EMD-8451</emdbEntry>
            <emdbEntry>EMD-8452</emdbEntry>
            <emdbEntry>EMD-8453</emdbEntry>
            <emdbEntry>EMD-8455</emdbEntry>
            <emdbEntry>EMD-8456</emdbEntry>
            <emdbEntry>EMD-8457</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0002-8858-8907" order="1">Davis JH</author>
                    <author authorORCID="0000-0001-6656-6320" order="2">Tan Y</author>
                    <author authorORCID="0000-0002-0624-5020" order="3">Carragher B</author>
                    <author authorORCID="0000-0002-3287-121X" order="4">Potter CS</author>
                    <author authorORCID="0000-0002-8124-7472" order="5">Lyumkis D</author>
                    <author authorORCID="0000-0002-8772-468X" order="6">Williamson JR</author>
                    <title>Modular Assembly of the Bacterial Large Ribosomal Subunit</title>
                    <journal>Cell</journal>
                    <journalAbbreviation>Cell</journalAbbreviation>
                    <country></country>
                    <issue>6</issue>
                    <volume>167</volume>
                    <firstPage>1610</firstPage>
                    <lastPage>1622.e15</lastPage>
                    <year>2016</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1016/j.cell.2016.11.020</externalReferences>
                    <details>131899 particle stack, aligned on a per-particle basis using Rubinstein's particle polishing software, exposure-weighted, not inverted, normalized. Stack contains a heterogeneous mixture of particles primarily comprising assembling 50S ribosomal subunits. </details>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Particle stack of L17-depleted 50S Ribosomal Assembly Intermediates</name>
        <directory>/data</directory>
        <category>picked particles - multiframe - unprocessed</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>131899</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <frameRange>
            <frameRangeMin>1</frameRangeMin>
            <frameRangeMax>1</frameRangeMax>
        </frameRange>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>320</imageWidth>
            <pixelWidth>1.31</pixelWidth>
            <imageHeight>320</imageHeight>
            <pixelHeight>1.31</pixelHeight>
        </dimensions>
        <details>131899 particle stack has been obtained from 2479 images with 50 frames per image, using frames from 1 to 50, aligned on a per-particle basis using Rubinstein's particle polishing software, exposure-weighted, not inverted, normalized. Stack contains a heterogeneous mixture of particles. In order to account for highly preferred orientation of the specimen, data was acquired using tilts ranging from 10-60 degrees, in addition to untilted images at 0 degrees. Parameter file for Frealign and Relion (stack is not yet normalized to Relion format) provided.</details>
        <segmentationList/>
    </imageSet>
</entry>
