<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-10032" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2015-08-28</depositionDate>
            <releaseDate>2015-08-28</releaseDate>
            <updateDate>2015-08-28</updateDate>
        </keyDates>
        <title>Cryo electron microscopy of YnaI</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0002-7962-4849</authorORCID>
            <firstName>Bettina</firstName>
            <lastName>Bottcher</lastName>
            <organization type="academic">University of Edinburgh</organization>
            <street>Max Born Crescent</street>
            <townOrCity>Edinburgh</townOrCity>
            <country>United Kingdom</country>
            <postOrZipCode>EH9 3B8</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0002-7962-4849</authorORCID>
            <firstName>Bettina</firstName>
            <lastName>Bottcher</lastName>
            <organization type="academic">University of Edinburgh</organization>
            <street>Max Born Crescent</street>
            <townOrCity>Edinburgh</townOrCity>
            <country>United Kingdom</country>
            <postOrZipCode>EH9 3B8</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-7962-4849">Bottcher B</author>
            <author>Prazak V</author>
            <author>Rasmussen A</author>
            <author>Black SS</author>
            <author>Rasmussen T</author>
        </authorsList>
        <datasetSize units="GB">107.6</datasetSize>
        <entryDOI>10.6019/EMPIAR-10032</entryDOI>
        <experimentType>EMDB</experimentType>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-3035</emdbEntry>
        </relatedEMDBEntries>
        <citationList/>
    </crossReferences>
    <imageSet>
        <name>ynai_particles</name>
        <directory>/data/particles_phaseflipped</directory>
        <category>picked particles - multiframe - processed</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>34799</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>160</imageWidth>
            <pixelWidth>1.729</pixelWidth>
            <imageHeight>160</imageHeight>
            <pixelHeight>1.729</pixelHeight>
        </dimensions>
        <details>Stack of phase flipped particle images + matching relion-star file
</details>
        <segmentationList/>
    </imageSet>
    <imageSet>
        <name>ynai_micrographs</name>
        <directory>/data/micrographs</directory>
        <category>micrographs - single frame</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>3308</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>UNSIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>4096</imageWidth>
            <pixelWidth>1.729</pixelWidth>
            <imageHeight>4096</imageHeight>
            <pixelHeight>1.729</pixelHeight>
        </dimensions>
        <details>Micrographs of YnaI (F20/TVIPS F416)
The approximate dose is 20 electrons/A2; micrographs have been acquired with EM-tools

The picked particle coordinates are found in: data/ynai/coordinates. These are the coordinates (EMAN-format) of the manually selected particle images.
The coordinates match the micrographs which have the same name but the extension  tif.
The picked particle images are found in: data/particles_phaseflipped</details>
        <segmentationList/>
    </imageSet>
</entry>
